Analysis of interatomic Contacts of Structural Units in PDB entry:
8DMO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DMO entry

There are 2 chains in PDB entry 8DMO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 7GLY 581
B
 LEU 7GLY 581
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 8DMO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 21Right-handed alpha
Helix 2
AA2
A
23 47Right-handed alpha
Helix 3
AA3
A
47 54Right-handed alpha
Helix 4
AA4
A
61 109Right-handed alpha
Helix 5
AA5
A
112 119Right-handed alpha
Helix 6
AA6
A
120 125Right-handed alpha
Helix 7
AA7
A
126 128Right-handed 310
Helix 8
AA8
A
130 164Right-handed alpha
Helix 9
AA9
A
164 212Right-handed alpha
Helix 10
AB1
A
213 221Right-handed alpha
Helix 11
AB2
A
222 272Right-handed alpha
Helix 12
AB3
A
272 277Right-handed alpha
Helix 13
AB4
A
280 302Right-handed alpha
Helix 14
AB5
A
303 323Right-handed alpha
Helix 15
AB6
A
381 390Right-handed alpha
Helix 16
AB7
A
411 418Right-handed alpha
Helix 17
AB8
A
432 438Right-handed alpha
Helix 18
AB9
A
446 457Right-handed alpha
Helix 19
AC1
A
459 464Right-handed alpha
Helix 20
AC2
A
468 472Right-handed 310
Helix 21
AC3
A
482 497Right-handed alpha
Helix 22
AC4
A
515 527Right-handed alpha
Helix 23
AC5
A
538 542Right-handed 310
Helix 24
AC6
A
561 569Right-handed alpha
Helix 25
AC7
A
570 578Right-handed alpha
Helix 26
AC8
B
8 21Right-handed alpha
Helix 27
AC9
B
23 47Right-handed alpha
Helix 28
AD1
B
47 54Right-handed alpha
Helix 29
AD2
B
61 109Right-handed alpha
Helix 30
AD3
B
113 119Right-handed alpha
Helix 31
AD4
B
120 130Right-handed alpha
Helix 32
AD5
B
130 200Right-handed alpha
Helix 33
AD6
B
200 212Right-handed alpha
Helix 34
AD7
B
213 221Right-handed alpha
Helix 35
AD8
B
222 250Right-handed alpha
Helix 36
AD9
B
250 270Right-handed alpha
Helix 37
AE1
B
272 277Right-handed alpha
Helix 38
AE2
B
280 302Right-handed alpha
Helix 39
AE3
B
303 323Right-handed alpha
Helix 40
AE4
B
381 390Right-handed alpha
Helix 41
AE5
B
411 418Right-handed alpha
Helix 42
AE6
B
432 438Right-handed alpha
Helix 43
AE7
B
441 445Right-handed 310
Helix 44
AE8
B
446 457Right-handed alpha
Helix 45
AE9
B
459 464Right-handed alpha
Helix 46
AF1
B
468 472Right-handed 310
Helix 47
AF2
B
482 497Right-handed alpha
Helix 48
AF3
B
515 527Right-handed alpha
Helix 49
AF4
B
538 542Right-handed 310
Helix 50
AF5
B
561 569Right-handed alpha
Helix 51
AF6
B
570 578Right-handed alpha
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There are 4 sheets in PDB entry 8DMO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 366first strand
Strand 2
A
342 349anti-parallel
Strand 3
A
397 402anti-parallel
Strand 4
A
405 406anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 422first strand
Strand 2
A
501 504parallel
Strand 3
A
531 535parallel
Strand 4
A
371 375parallel
Strand 5
A
547 552parallel
Strand 6
A
555 560anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
359 366first strand
Strand 2
B
342 349anti-parallel
Strand 3
B
397 402anti-parallel
Strand 4
B
405 406anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
419 422first strand
Strand 2
B
501 504parallel
Strand 3
B
531 535parallel
Strand 4
B
371 375parallel
Strand 5
B
547 552parallel
Strand 6
B
555 560anti-parallel
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