Analysis of interatomic Contacts of Structural Units in PDB entry:
8DMP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DMP entry

There are 4 chains in PDB entry 8DMP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 37	ARG 409
B	SER 41	ARG 409
C	SER 41	SER 410
D	PRO 38	THR 224

There are120 helices in PDB entry 8DMP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	48	64	Right-handed alpha
Helix 2	AA2	A	70	79	Right-handed alpha
Helix 3	AA3	A	88	99	Right-handed alpha
Helix 4	AA4	A	118	126	Right-handed alpha
Helix 5	AA5	A	172	178	Right-handed alpha
Helix 6	AA6	A	185	211	Right-handed alpha
Helix 7	AA7	A	225	232	Right-handed 310
Helix 8	AA8	A	234	250	Right-handed alpha
Helix 9	AA9	A	251	254	Right-handed 310
Helix 10	AB1	A	321	327	Right-handed 310
Helix 11	AB2	A	330	339	Right-handed alpha
Helix 12	AB3	A	341	348	Right-handed alpha
Helix 13	AB4	A	365	370	Right-handed alpha
Helix 14	AB5	A	375	384	Right-handed alpha
Helix 15	AB6	A	403	409	Right-handed alpha
Helix 16	AB7	B	49	64	Right-handed alpha
Helix 17	AB8	B	70	79	Right-handed alpha
Helix 18	AB9	B	88	99	Right-handed alpha
Helix 19	AC1	B	118	126	Right-handed alpha
Helix 20	AC2	B	172	178	Right-handed alpha
Helix 21	AC3	B	185	211	Right-handed alpha
Helix 22	AC4	B	225	232	Right-handed 310
Helix 23	AC5	B	234	250	Right-handed alpha
Helix 24	AC6	B	251	254	Right-handed 310
Helix 25	AC7	B	321	327	Right-handed 310
Helix 26	AC8	B	330	339	Right-handed alpha
Helix 27	AC9	B	341	348	Right-handed alpha
Helix 28	AD1	B	363	370	Right-handed alpha
Helix 29	AD2	B	375	384	Right-handed alpha
Helix 30	AD3	B	402	408	Right-handed alpha
Helix 31	AD4	C	49	64	Right-handed alpha
Helix 32	AD5	C	70	79	Right-handed alpha
Helix 33	AD6	C	88	99	Right-handed alpha
Helix 34	AD7	C	118	126	Right-handed alpha
Helix 35	AD8	C	172	178	Right-handed alpha
Helix 36	AD9	C	185	211	Right-handed alpha
Helix 37	AE1	C	225	230	Right-handed 310
Helix 38	AE2	C	231	250	Right-handed alpha
Helix 39	AE3	C	251	254	Right-handed 310
Helix 40	AE4	C	321	327	Right-handed 310
Helix 41	AE5	C	330	339	Right-handed alpha
Helix 42	AE6	C	341	348	Right-handed alpha
Helix 43	AE7	C	363	370	Right-handed alpha
Helix 44	AE8	C	375	384	Right-handed alpha
Helix 45	AE9	C	403	409	Right-handed alpha
Helix 46	AF1	D	48	64	Right-handed alpha
Helix 47	AF2	D	70	79	Right-handed alpha
Helix 48	AF3	D	88	99	Right-handed alpha
Helix 49	AF4	D	118	126	Right-handed alpha
Helix 50	AF5	D	172	178	Right-handed alpha
Helix 51	AF6	D	185	211	Right-handed alpha
Helix 52	AF7	D	225	232	Right-handed 310
Helix 53	AF8	D	234	250	Right-handed alpha
Helix 54	AF9	D	251	254	Right-handed 310
Helix 55	AG1	D	321	327	Right-handed 310
Helix 56	AG2	D	330	339	Right-handed alpha
Helix 57	AG3	D	341	348	Right-handed alpha
Helix 58	AG4	D	363	368	Right-handed alpha
Helix 59	AG5	D	375	384	Right-handed alpha
Helix 60	AG6	D	403	409	Right-handed alpha
Helix 61	AG7	E	48	64	Right-handed alpha
Helix 62	AG8	E	70	79	Right-handed alpha
Helix 63	AG9	E	88	99	Right-handed alpha
Helix 64	AH1	E	118	126	Right-handed alpha
Helix 65	AH2	E	172	178	Right-handed alpha
Helix 66	AH3	E	185	211	Right-handed alpha
Helix 67	AH4	E	225	232	Right-handed 310
Helix 68	AH5	E	234	250	Right-handed alpha
Helix 69	AH6	E	251	254	Right-handed 310
Helix 70	AH7	E	321	325	Right-handed 310
Helix 71	AH8	E	330	339	Right-handed alpha
Helix 72	AH9	E	341	348	Right-handed alpha
Helix 73	AI1	E	363	369	Right-handed alpha
Helix 74	AI2	E	375	384	Right-handed alpha
Helix 75	AI3	E	402	408	Right-handed alpha
Helix 76	AI4	F	49	64	Right-handed alpha
Helix 77	AI5	F	70	79	Right-handed alpha
Helix 78	AI6	F	88	99	Right-handed alpha
Helix 79	AI7	F	118	126	Right-handed alpha
Helix 80	AI8	F	172	178	Right-handed alpha
Helix 81	AI9	F	185	211	Right-handed alpha
Helix 82	AJ1	F	225	232	Right-handed 310
Helix 83	AJ2	F	234	250	Right-handed alpha
Helix 84	AJ3	F	251	254	Right-handed 310
Helix 85	AJ4	F	321	325	Right-handed 310
Helix 86	AJ5	F	330	339	Right-handed alpha
Helix 87	AJ6	F	341	348	Right-handed alpha
Helix 88	AJ7	F	363	368	Right-handed alpha
Helix 89	AJ8	F	375	384	Right-handed alpha
Helix 90	AJ9	F	402	409	Right-handed alpha
Helix 91	AK1	G	49	64	Right-handed alpha
Helix 92	AK2	G	70	79	Right-handed alpha
Helix 93	AK3	G	88	99	Right-handed alpha
Helix 94	AK4	G	118	126	Right-handed alpha
Helix 95	AK5	G	172	178	Right-handed alpha
Helix 96	AK6	G	185	211	Right-handed alpha
Helix 97	AK7	G	225	232	Right-handed 310
Helix 98	AK8	G	234	250	Right-handed alpha
Helix 99	AK9	G	251	254	Right-handed 310
Helix 100	AL1	G	321	327	Right-handed 310
Helix 101	AL2	G	330	339	Right-handed alpha
Helix 102	AL3	G	341	348	Right-handed alpha
Helix 103	AL4	G	363	368	Right-handed alpha
Helix 104	AL5	G	375	384	Right-handed alpha
Helix 105	AL6	G	402	409	Right-handed alpha
Helix 106	AL7	H	49	64	Right-handed alpha
Helix 107	AL8	H	70	79	Right-handed alpha
Helix 108	AL9	H	88	99	Right-handed alpha
Helix 109	AM1	H	118	126	Right-handed alpha
Helix 110	AM2	H	172	178	Right-handed alpha
Helix 111	AM3	H	185	211	Right-handed alpha
Helix 112	AM4	H	225	232	Right-handed 310
Helix 113	AM5	H	234	250	Right-handed alpha
Helix 114	AM6	H	251	254	Right-handed 310
Helix 115	AM7	H	321	325	Right-handed 310
Helix 116	AM8	H	330	339	Right-handed alpha
Helix 117	AM9	H	341	348	Right-handed alpha
Helix 118	AN1	H	363	370	Right-handed alpha
Helix 119	AN2	H	375	384	Right-handed alpha
Helix 120	AN3	H	402	408	Right-handed alpha

There are 24 sheets in PDB entry 8DMP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	275	first strand
Strand 2	A	278	282	anti-parallel
Strand 3	A	257	263	parallel
Strand 4	A	214	220	parallel
Strand 5	A	306	314	parallel
Strand 6	A	148	161	parallel
Strand 7	A	129	138	anti-parallel
Strand 8	A	44	47	anti-parallel
Strand 9	A	391	394	parallel
Strand 10	A	400	402	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	180	first strand
Strand 2	A	183	184	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	354	first strand
Strand 2	A	359	361	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	275	first strand
Strand 2	B	278	282	anti-parallel
Strand 3	B	257	263	parallel
Strand 4	B	214	220	parallel
Strand 5	B	306	314	parallel
Strand 6	B	148	161	parallel
Strand 7	B	129	138	anti-parallel
Strand 8	B	44	48	anti-parallel
Strand 9	B	391	394	parallel
Strand 10	B	400	401	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	180	first strand
Strand 2	B	183	184	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	354	first strand
Strand 2	B	359	361	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	275	first strand
Strand 2	C	278	282	anti-parallel
Strand 3	C	257	263	parallel
Strand 4	C	214	220	parallel
Strand 5	C	306	314	parallel
Strand 6	C	148	161	parallel
Strand 7	C	129	138	anti-parallel
Strand 8	C	44	48	anti-parallel
Strand 9	C	391	394	parallel
Strand 10	C	400	402	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	180	first strand
Strand 2	C	183	184	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	354	first strand
Strand 2	C	359	361	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	271	275	first strand
Strand 2	D	278	282	anti-parallel
Strand 3	D	257	263	parallel
Strand 4	D	214	220	parallel
Strand 5	D	306	314	parallel
Strand 6	D	148	161	parallel
Strand 7	D	129	138	anti-parallel
Strand 8	D	44	47	anti-parallel
Strand 9	D	391	394	parallel
Strand 10	D	400	402	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	179	180	first strand
Strand 2	D	183	184	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	352	354	first strand
Strand 2	D	359	361	anti-parallel

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There are 10 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	275	first strand
Strand 2	E	278	282	anti-parallel
Strand 3	E	257	263	parallel
Strand 4	E	214	220	parallel
Strand 5	E	306	314	parallel
Strand 6	E	148	161	parallel
Strand 7	E	129	138	anti-parallel
Strand 8	E	44	47	anti-parallel
Strand 9	E	391	394	parallel
Strand 10	E	400	401	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	179	180	first strand
Strand 2	E	183	184	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	352	354	first strand
Strand 2	E	359	361	anti-parallel

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There are 10 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	271	275	first strand
Strand 2	F	278	282	anti-parallel
Strand 3	F	257	263	parallel
Strand 4	F	214	220	parallel
Strand 5	F	306	314	parallel
Strand 6	F	148	161	parallel
Strand 7	F	129	138	anti-parallel
Strand 8	F	44	48	anti-parallel
Strand 9	F	391	394	parallel
Strand 10	F	400	401	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	179	180	first strand
Strand 2	F	183	184	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	352	354	first strand
Strand 2	F	359	361	anti-parallel

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There are 10 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	271	275	first strand
Strand 2	G	278	282	anti-parallel
Strand 3	G	257	263	parallel
Strand 4	G	214	220	parallel
Strand 5	G	306	314	parallel
Strand 6	G	148	161	parallel
Strand 7	G	129	138	anti-parallel
Strand 8	G	44	48	anti-parallel
Strand 9	G	391	394	parallel
Strand 10	G	400	401	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	179	180	first strand
Strand 2	G	183	184	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	352	354	first strand
Strand 2	G	359	361	anti-parallel

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There are 10 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	271	275	first strand
Strand 2	H	278	282	anti-parallel
Strand 3	H	257	263	parallel
Strand 4	H	214	220	parallel
Strand 5	H	306	314	parallel
Strand 6	H	148	161	parallel
Strand 7	H	129	138	anti-parallel
Strand 8	H	44	48	anti-parallel
Strand 9	H	391	394	parallel
Strand 10	H	400	401	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	179	180	first strand
Strand 2	H	183	184	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	352	354	first strand
Strand 2	H	359	361	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DMP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DMP