Analysis of interatomic Contacts of Structural Units in PDB entry:
8DMR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DMR entry

There is 1 chain in PDB entry 8DMR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 37ARG 409
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8DMR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 64Right-handed alpha
Helix 2
AA2
A
70 78Right-handed alpha
Helix 3
AA3
A
88 99Right-handed alpha
Helix 4
AA4
A
118 126Right-handed alpha
Helix 5
AA5
A
172 178Right-handed alpha
Helix 6
AA6
A
185 211Right-handed alpha
Helix 7
AA7
A
228 232Right-handed 310
Helix 8
AA8
A
234 251Right-handed alpha
Helix 9
AA9
A
252 254Right-handed 310
Helix 10
AB1
A
321 327Right-handed 310
Helix 11
AB2
A
330 339Right-handed alpha
Helix 12
AB3
A
341 348Right-handed alpha
Helix 13
AB4
A
363 368Right-handed alpha
Helix 14
AB5
A
369 373Right-handed 310
Helix 15
AB6
A
375 384Right-handed alpha
Helix 16
AB7
A
403 409Right-handed alpha
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There are 3 sheets in PDB entry 8DMR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 275first strand
Strand 2
A
278 282anti-parallel
Strand 3
A
257 263parallel
Strand 4
A
214 220parallel
Strand 5
A
306 314parallel
Strand 6
A
148 161parallel
Strand 7
A
129 138anti-parallel
Strand 8
A
44 48anti-parallel
Strand 9
A
391 394parallel
Strand 10
A
400 402anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 180first strand
Strand 2
A
183 184anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 354first strand
Strand 2
A
359 361anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il