Analysis of interatomic Contacts of Structural Units in PDB entry:
8DMU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DMU entry

There are 3 chains in PDB entry 8DMU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TRP 25	LEU 506
B	TRP 25	ILE 507
C	SER 24	ARG 359

There are 88 helices in PDB entry 8DMU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	46	Right-handed alpha
Helix 2	AA2	A	56	66	Right-handed alpha
Helix 3	AA3	A	77	81	Right-handed 310
Helix 4	AA4	A	82	84	Right-handed 310
Helix 5	AA5	A	85	95	Right-handed alpha
Helix 6	AA6	A	102	119	Right-handed alpha
Helix 7	AA7	A	120	128	Right-handed alpha
Helix 8	AA8	A	131	142	Right-handed alpha
Helix 9	AA9	A	165	169	Right-handed 310
Helix 10	AB1	A	185	193	Right-handed alpha
Helix 11	AB2	A	243	247	Right-handed alpha
Helix 12	AB3	A	255	259	Right-handed 310
Helix 13	AB4	A	273	287	Right-handed alpha
Helix 14	AB5	A	293	297	Right-handed 310
Helix 15	AB6	A	314	340	Right-handed alpha
Helix 16	AB7	A	360	377	Right-handed alpha
Helix 17	AB8	A	378	381	Right-handed 310
Helix 18	AB9	A	447	453	Right-handed 310
Helix 19	AC1	A	458	467	Right-handed alpha
Helix 20	AC2	A	468	473	Right-handed alpha
Helix 21	AC3	A	483	486	Right-handed 310
Helix 22	AC4	A	499	506	Right-handed alpha
Helix 23	AC5	B	35	46	Right-handed alpha
Helix 24	AC6	B	56	66	Right-handed alpha
Helix 25	AC7	B	77	81	Right-handed 310
Helix 26	AC8	B	82	84	Right-handed 310
Helix 27	AC9	B	85	95	Right-handed alpha
Helix 28	AD1	B	102	119	Right-handed alpha
Helix 29	AD2	B	120	128	Right-handed alpha
Helix 30	AD3	B	131	142	Right-handed alpha
Helix 31	AD4	B	165	169	Right-handed 310
Helix 32	AD5	B	185	193	Right-handed alpha
Helix 33	AD6	B	243	247	Right-handed alpha
Helix 34	AD7	B	255	259	Right-handed 310
Helix 35	AD8	B	273	287	Right-handed alpha
Helix 36	AD9	B	293	297	Right-handed 310
Helix 37	AE1	B	314	340	Right-handed alpha
Helix 38	AE2	B	360	377	Right-handed alpha
Helix 39	AE3	B	378	381	Right-handed 310
Helix 40	AE4	B	447	453	Right-handed 310
Helix 41	AE5	B	458	467	Right-handed alpha
Helix 42	AE6	B	468	473	Right-handed alpha
Helix 43	AE7	B	483	486	Right-handed 310
Helix 44	AE8	B	499	506	Right-handed alpha
Helix 45	AE9	C	35	47	Right-handed alpha
Helix 46	AF1	C	56	66	Right-handed alpha
Helix 47	AF2	C	77	81	Right-handed 310
Helix 48	AF3	C	82	84	Right-handed 310
Helix 49	AF4	C	85	95	Right-handed alpha
Helix 50	AF5	C	102	119	Right-handed alpha
Helix 51	AF6	C	120	128	Right-handed alpha
Helix 52	AF7	C	131	142	Right-handed alpha
Helix 53	AF8	C	165	169	Right-handed 310
Helix 54	AF9	C	185	193	Right-handed alpha
Helix 55	AG1	C	218	222	Right-handed 310
Helix 56	AG2	C	243	247	Right-handed alpha
Helix 57	AG3	C	255	259	Right-handed 310
Helix 58	AG4	C	273	287	Right-handed alpha
Helix 59	AG5	C	293	297	Right-handed 310
Helix 60	AG6	C	314	340	Right-handed alpha
Helix 61	AG7	C	360	377	Right-handed alpha
Helix 62	AG8	C	378	381	Right-handed 310
Helix 63	AG9	C	447	453	Right-handed 310
Helix 64	AH1	C	458	466	Right-handed alpha
Helix 65	AH2	C	468	473	Right-handed alpha
Helix 66	AH3	C	483	486	Right-handed 310
Helix 67	AH4	C	499	505	Right-handed alpha
Helix 68	AH5	D	35	47	Right-handed alpha
Helix 69	AH6	D	56	66	Right-handed alpha
Helix 70	AH7	D	77	81	Right-handed 310
Helix 71	AH8	D	82	84	Right-handed 310
Helix 72	AH9	D	85	95	Right-handed alpha
Helix 73	AI1	D	102	119	Right-handed alpha
Helix 74	AI2	D	120	128	Right-handed alpha
Helix 75	AI3	D	131	142	Right-handed alpha
Helix 76	AI4	D	185	193	Right-handed alpha
Helix 77	AI5	D	243	247	Right-handed alpha
Helix 78	AI6	D	255	259	Right-handed 310
Helix 79	AI7	D	273	286	Right-handed alpha
Helix 80	AI8	D	293	297	Right-handed 310
Helix 81	AI9	D	314	340	Right-handed alpha
Helix 82	AJ1	D	360	377	Right-handed alpha
Helix 83	AJ2	D	378	381	Right-handed 310
Helix 84	AJ3	D	447	453	Right-handed 310
Helix 85	AJ4	D	458	466	Right-handed alpha
Helix 86	AJ5	D	468	473	Right-handed alpha
Helix 87	AJ6	D	483	486	Right-handed 310
Helix 88	AJ7	D	499	504	Right-handed alpha

There are 16 sheets in PDB entry 8DMU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	404	406	first strand
Strand 2	A	414	419	anti-parallel
Strand 3	A	383	388	parallel
Strand 4	A	343	347	parallel
Strand 5	A	433	439	parallel
Strand 6	A	225	231	parallel
Strand 7	A	196	202	anti-parallel
Strand 8	A	97	101	anti-parallel
Strand 9	A	488	491	parallel
Strand 10	A	495	498	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	148	first strand
Strand 2	A	153	155	anti-parallel
Strand 3	A	161	163	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	249	first strand
Strand 2	A	310	313	anti-parallel
Strand 3	A	304	307	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	396	first strand
Strand 2	A	399	400	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	406	first strand
Strand 2	B	414	419	anti-parallel
Strand 3	B	383	388	parallel
Strand 4	B	343	347	parallel
Strand 5	B	433	439	parallel
Strand 6	B	225	231	parallel
Strand 7	B	196	202	anti-parallel
Strand 8	B	97	101	anti-parallel
Strand 9	B	488	491	parallel
Strand 10	B	495	498	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	148	first strand
Strand 2	B	153	155	anti-parallel
Strand 3	B	161	163	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	249	first strand
Strand 2	B	310	313	anti-parallel
Strand 3	B	304	307	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	395	396	first strand
Strand 2	B	399	400	anti-parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	404	406	first strand
Strand 2	C	414	419	anti-parallel
Strand 3	C	383	388	parallel
Strand 4	C	343	347	parallel
Strand 5	C	433	439	parallel
Strand 6	C	225	231	parallel
Strand 7	C	196	202	anti-parallel
Strand 8	C	97	101	anti-parallel
Strand 9	C	488	491	parallel
Strand 10	C	495	498	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	148	first strand
Strand 2	C	153	155	anti-parallel
Strand 3	C	161	163	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	249	first strand
Strand 2	C	310	313	anti-parallel
Strand 3	C	304	307	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	395	396	first strand
Strand 2	C	399	400	anti-parallel

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There are 10 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	404	406	first strand
Strand 2	D	414	419	anti-parallel
Strand 3	D	383	388	parallel
Strand 4	D	343	347	parallel
Strand 5	D	433	439	parallel
Strand 6	D	225	231	parallel
Strand 7	D	196	202	anti-parallel
Strand 8	D	97	101	anti-parallel
Strand 9	D	488	491	parallel
Strand 10	D	495	498	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	148	first strand
Strand 2	D	153	155	anti-parallel
Strand 3	D	161	163	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	249	first strand
Strand 2	D	310	313	anti-parallel
Strand 3	D	304	307	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	395	396	first strand
Strand 2	D	399	400	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DMU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DMU