Analysis of interatomic Contacts of Structural Units in PDB entry:
8DN6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DN6 entry

There are 6 chains in PDB entry 8DN6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 252	GLU 449
B	ASP 252	GLU 449
C	SER 3	LYS 224
D	ASP 2	CYS 215
E	GLU 4	PRO 223
F	SER 1	CYS 215

There are 27 helices in PDB entry 8DN6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	275	297	Right-handed alpha
Helix 2	AA2	A	303	317	Right-handed alpha
Helix 3	AA3	A	321	339	Right-handed alpha
Helix 4	AA4	A	386	392	Right-handed alpha
Helix 5	AA5	A	395	399	Right-handed 310
Helix 6	AA6	A	405	416	Right-handed alpha
Helix 7	AA7	A	417	420	Right-handed 310
Helix 8	AA8	B	276	297	Right-handed alpha
Helix 9	AA9	B	303	315	Right-handed alpha
Helix 10	AB1	B	321	339	Right-handed alpha
Helix 11	AB2	B	386	393	Right-handed alpha
Helix 12	AB3	B	395	399	Right-handed 310
Helix 13	AB4	B	405	416	Right-handed alpha
Helix 14	AB5	B	417	420	Right-handed 310
Helix 15	AB6	C	90	94	Right-handed 310
Helix 16	AB7	C	166	168	Right-handed 310
Helix 17	AB8	C	197	202	Right-handed alpha
Helix 18	AB9	C	210	214	Right-handed 310
Helix 19	AC1	D	80	84	Right-handed 310
Helix 20	AC2	D	124	128	Right-handed 310
Helix 21	AC3	D	184	190	Right-handed alpha
Helix 22	AC4	E	90	94	Right-handed 310
Helix 23	AC5	E	166	168	Right-handed 310
Helix 24	AC6	E	210	214	Right-handed 310
Helix 25	AC7	F	80	84	Right-handed 310
Helix 26	AC8	F	122	127	Right-handed alpha
Helix 27	AC9	F	184	189	Right-handed alpha

There are 25 sheets in PDB entry 8DN6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	299	first strand
Strand 2	A	256	261	anti-parallel
Strand 3	A	356	362	parallel
Strand 4	A	345	353	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	380	381	first strand
Strand 2	A	366	374	anti-parallel
Strand 3	A	439	446	parallel
Strand 4	A	424	431	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	299	first strand
Strand 2	B	256	261	anti-parallel
Strand 3	B	356	362	parallel
Strand 4	B	345	353	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	380	381	first strand
Strand 2	B	366	374	anti-parallel
Strand 3	B	439	447	parallel
Strand 4	B	422	431	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	10	first strand
Strand 2	C	21	27	anti-parallel
Strand 3	C	81	86	anti-parallel
Strand 4	C	71	76	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	15	first strand
Strand 2	C	118	121	parallel
Strand 3	C	95	103	anti-parallel
Strand 4	C	35	42	anti-parallel
Strand 5	C	48	54	anti-parallel
Strand 6	C	61	63	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	15	first strand
Strand 2	C	118	121	parallel
Strand 3	C	95	103	anti-parallel
Strand 4	C	110	113	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	134	first strand
Strand 2	C	145	155	anti-parallel
Strand 3	C	186	195	anti-parallel
Strand 4	C	173	175	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	134	first strand
Strand 2	C	145	155	anti-parallel
Strand 3	C	186	195	anti-parallel
Strand 4	C	179	180	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	164	first strand
Strand 2	C	204	209	anti-parallel
Strand 3	C	218	221	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	8	first strand
Strand 2	D	20	26	anti-parallel
Strand 3	D	71	76	anti-parallel
Strand 4	D	63	68	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	14	first strand
Strand 2	D	103	107	parallel
Strand 3	D	86	93	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	46	49	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	14	first strand
Strand 2	D	103	107	parallel
Strand 3	D	86	93	anti-parallel
Strand 4	D	96	99	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	119	first strand
Strand 2	D	130	140	anti-parallel
Strand 3	D	174	183	anti-parallel
Strand 4	D	160	164	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	151	first strand
Strand 2	D	192	199	anti-parallel
Strand 3	D	206	211	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	10	first strand
Strand 2	E	21	27	anti-parallel
Strand 3	E	81	86	anti-parallel
Strand 4	E	71	76	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	15	first strand
Strand 2	E	118	121	parallel
Strand 3	E	95	103	anti-parallel
Strand 4	E	35	42	anti-parallel
Strand 5	E	48	55	anti-parallel
Strand 6	E	60	63	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	131	134	first strand
Strand 2	E	145	155	anti-parallel
Strand 3	E	186	195	anti-parallel
Strand 4	E	173	175	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	131	134	first strand
Strand 2	E	145	155	anti-parallel
Strand 3	E	186	195	anti-parallel
Strand 4	E	179	180	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	161	164	first strand
Strand 2	E	204	209	anti-parallel
Strand 3	E	218	221	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	8	first strand
Strand 2	F	20	26	anti-parallel
Strand 3	F	71	76	anti-parallel
Strand 4	F	63	68	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	14	first strand
Strand 2	F	103	107	parallel
Strand 3	F	86	93	anti-parallel
Strand 4	F	34	39	anti-parallel
Strand 5	F	46	50	anti-parallel
Strand 6	F	54	55	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	14	first strand
Strand 2	F	103	107	parallel
Strand 3	F	86	93	anti-parallel
Strand 4	F	96	99	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	115	119	first strand
Strand 2	F	130	140	anti-parallel
Strand 3	F	174	183	anti-parallel
Strand 4	F	160	164	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	145	151	first strand
Strand 2	F	192	199	anti-parallel
Strand 3	F	206	211	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DN6

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DN6