Analysis of interatomic Contacts of Structural Units in PDB entry:
8DN7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DN7 entry

There are 6 chains in PDB entry 8DN7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	ARG 113	ASP 228
C	ALA 114	LYS 231
D	VAL 5	CYS 232
A	GLU 4	SER 231
B	ILE 3	GLU 216
H	ILE 3	CYS 217

There are 22 helices in PDB entry 8DN7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	138	160	Right-handed alpha
Helix 2	AA2	E	166	181	Right-handed alpha
Helix 3	AA3	E	184	203	Right-handed alpha
Helix 4	AA4	C	138	160	Right-handed alpha
Helix 5	AA5	C	166	181	Right-handed alpha
Helix 6	AA6	C	184	203	Right-handed alpha
Helix 7	AA7	D	31	33	Right-handed 310
Helix 8	AA8	D	65	68	Right-handed 310
Helix 9	AA9	D	90	94	Right-handed 310
Helix 10	AB1	D	172	174	Right-handed 310
Helix 11	AB2	D	203	206	Right-handed 310
Helix 12	AB3	D	217	220	Right-handed 310
Helix 13	AB4	A	65	68	Right-handed 310
Helix 14	AB5	A	90	94	Right-handed 310
Helix 15	AB6	A	172	174	Right-handed 310
Helix 16	AB7	A	203	207	Right-handed 310
Helix 17	AB8	A	217	220	Right-handed 310
Helix 18	AB9	B	80	84	Right-handed 310
Helix 19	AC1	B	124	129	Right-handed alpha
Helix 20	AC2	B	185	191	Right-handed alpha
Helix 21	AC3	H	80	84	Right-handed 310
Helix 22	AC4	H	185	191	Right-handed alpha

There are 24 sheets in PDB entry 8DN7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	161	162	first strand
Strand 2	E	116	121	anti-parallel
Strand 3	E	219	225	parallel
Strand 4	E	208	213	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	162	first strand
Strand 2	C	116	121	anti-parallel
Strand 3	C	219	225	parallel
Strand 4	C	208	213	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	10	first strand
Strand 2	D	21	28	anti-parallel
Strand 3	D	81	86	anti-parallel
Strand 4	D	71	76	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	15	first strand
Strand 2	D	123	127	parallel
Strand 3	D	95	106	anti-parallel
Strand 4	D	35	42	anti-parallel
Strand 5	D	48	55	anti-parallel
Strand 6	D	60	63	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	15	first strand
Strand 2	D	123	127	parallel
Strand 3	D	95	106	anti-parallel
Strand 4	D	111	119	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	140	first strand
Strand 2	D	151	161	anti-parallel
Strand 3	D	192	201	anti-parallel
Strand 4	D	179	181	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	140	first strand
Strand 2	D	151	161	anti-parallel
Strand 3	D	192	201	anti-parallel
Strand 4	D	185	186	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	170	first strand
Strand 2	D	211	216	anti-parallel
Strand 3	D	221	226	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	10	first strand
Strand 2	A	21	27	anti-parallel
Strand 3	A	81	86	anti-parallel
Strand 4	A	71	76	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	15	first strand
Strand 2	A	123	127	parallel
Strand 3	A	95	106	anti-parallel
Strand 4	A	35	42	anti-parallel
Strand 5	A	48	55	anti-parallel
Strand 6	A	60	63	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	15	first strand
Strand 2	A	123	127	parallel
Strand 3	A	95	106	anti-parallel
Strand 4	A	111	119	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	140	first strand
Strand 2	A	151	161	anti-parallel
Strand 3	A	192	201	anti-parallel
Strand 4	A	179	181	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	140	first strand
Strand 2	A	151	161	anti-parallel
Strand 3	A	192	201	anti-parallel
Strand 4	A	185	186	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	170	first strand
Strand 2	A	211	216	anti-parallel
Strand 3	A	221	226	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	8	first strand
Strand 2	B	20	27	anti-parallel
Strand 3	B	71	76	anti-parallel
Strand 4	B	63	68	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	15	first strand
Strand 2	B	105	110	parallel
Strand 3	B	85	91	anti-parallel
Strand 4	B	34	39	anti-parallel
Strand 5	B	46	50	anti-parallel
Strand 6	B	54	55	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	15	first strand
Strand 2	B	105	110	parallel
Strand 3	B	85	91	anti-parallel
Strand 4	B	100	101	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	121	first strand
Strand 2	B	133	142	anti-parallel
Strand 3	B	176	184	anti-parallel
Strand 4	B	162	166	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	148	153	anti-parallel
Strand 3	B	194	200	anti-parallel
Strand 4	B	208	213	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	8	first strand
Strand 2	H	20	27	anti-parallel
Strand 3	H	71	76	anti-parallel
Strand 4	H	63	68	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	15	first strand
Strand 2	H	105	110	parallel
Strand 3	H	85	91	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	46	50	anti-parallel
Strand 6	H	54	55	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	15	first strand
Strand 2	H	105	110	parallel
Strand 3	H	85	91	anti-parallel
Strand 4	H	100	101	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	117	121	first strand
Strand 2	H	133	142	anti-parallel
Strand 3	H	176	184	anti-parallel
Strand 4	H	162	166	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	156	157	first strand
Strand 2	H	148	153	anti-parallel
Strand 3	H	194	200	anti-parallel
Strand 4	H	208	213	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DN7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DN7