Analysis of interatomic Contacts of Structural Units in PDB entry:
8DN8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DN8 entry

There are 4 chains in PDB entry 8DN8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1PRO 395
B
 ASN 2ALA 256
C
 GLY 1PRO 395
D
 ASN 2ALA 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 8DN8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 27Right-handed alpha
Helix 2
AA2
A
59 69Right-handed alpha
Helix 3
AA3
A
99 112Right-handed alpha
Helix 4
AA4
A
114 130Right-handed alpha
Helix 5
AA5
A
138 142Right-handed 310
Helix 6
AA6
A
143 157Right-handed alpha
Helix 7
AA7
A
168 172Right-handed 310
Helix 8
AA8
A
175 191Right-handed alpha
Helix 9
AA9
A
200 205Right-handed alpha
Helix 10
AB1
A
224 239Right-handed alpha
Helix 11
AB2
B
3 18Right-handed alpha
Helix 12
AB3
B
20 26Right-handed alpha
Helix 13
AB4
B
30 41Right-handed alpha
Helix 14
AB5
B
55 83Right-handed alpha
Helix 15
AB6
B
83 88Right-handed alpha
Helix 16
AB7
B
88 93Right-handed alpha
Helix 17
AB8
B
101 129Right-handed alpha
Helix 18
AB9
B
131 137Right-handed 310
Helix 19
AC1
B
139 163Right-handed alpha
Helix 20
AC2
B
167 181Right-handed alpha
Helix 21
AC3
B
188 192Right-handed 310
Helix 22
AC4
B
196 202Right-handed alpha
Helix 23
AC5
B
205 217Right-handed alpha
Helix 24
AC6
B
223 254Right-handed alpha
Helix 25
AC7
C
17 27Right-handed alpha
Helix 26
AC8
C
59 69Right-handed alpha
Helix 27
AC9
C
100 102Right-handed 310
Helix 28
AD1
C
103 112Right-handed alpha
Helix 29
AD2
C
114 130Right-handed alpha
Helix 30
AD3
C
138 142Right-handed 310
Helix 31
AD4
C
143 157Right-handed alpha
Helix 32
AD5
C
167 172Right-handed 310
Helix 33
AD6
C
174 191Right-handed alpha
Helix 34
AD7
C
201 207Right-handed alpha
Helix 35
AD8
C
224 240Right-handed alpha
Helix 36
AD9
D
3 18Right-handed alpha
Helix 37
AE1
D
23 44Right-handed alpha
Helix 38
AE2
D
47 51Right-handed 310
Helix 39
AE3
D
55 88Right-handed alpha
Helix 40
AE4
D
88 93Right-handed alpha
Helix 41
AE5
D
101 129Right-handed alpha
Helix 42
AE6
D
139 165Right-handed alpha
Helix 43
AE7
D
167 180Right-handed alpha
Helix 44
AE8
D
181 183Right-handed 310
Helix 45
AE9
D
188 192Right-handed 310
Helix 46
AF1
D
193 201Right-handed alpha
Helix 47
AF2
D
205 217Right-handed alpha
Helix 48
AF3
D
225 248Right-handed alpha
Helix 49
AF4
D
248 256Right-handed alpha
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There are 10 sheets in PDB entry 8DN8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 40first strand
Strand 2
A
2 10anti-parallel
Strand 3
A
43 44anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 40first strand
Strand 2
A
2 10anti-parallel
Strand 3
A
75 79anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
A
162 165parallel
Strand 3
A
193 197parallel
Strand 4
A
49 53parallel
Strand 5
A
210 215parallel
Strand 6
A
218 223anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 265first strand
Strand 2
A
279 288anti-parallel
Strand 3
A
326 335anti-parallel
Strand 4
C
388 393anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 371first strand
Strand 2
A
341 350anti-parallel
Strand 3
A
296 302anti-parallel
Strand 4
A
308 313anti-parallel
Strand 5
C
380 381anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
389 392first strand
Strand 2
C
326 335anti-parallel
Strand 3
C
279 288anti-parallel
Strand 4
C
259 266anti-parallel
Strand 5
C
269 270anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 44first strand
Strand 2
C
2 4anti-parallel
Strand 3
C
78 80anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
84 86first strand
Strand 2
C
162 165parallel
Strand 3
C
194 197parallel
Strand 4
C
49 53parallel
Strand 5
C
211 213parallel
Strand 6
C
222 223anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
274 276first strand
Strand 2
C
367 374parallel
Strand 3
C
341 351anti-parallel
Strand 4
C
297 302anti-parallel
Strand 5
C
308 313anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
274 276first strand
Strand 2
C
367 374parallel
Strand 3
C
341 351anti-parallel
Strand 4
C
358 361anti-parallel
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