Analysis of interatomic Contacts of Structural Units in PDB entry:
8DNC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DNC entry

There are 4 chains in PDB entry 8DNC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	PRO 395
B	ASN 2	ALA 256
C	GLY 1	PRO 395
D	ASN 2	ALA 256

There are 52 helices in PDB entry 8DNC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	27	Right-handed alpha
Helix 2	AA2	A	59	69	Right-handed alpha
Helix 3	AA3	A	101	112	Right-handed alpha
Helix 4	AA4	A	114	130	Right-handed alpha
Helix 5	AA5	A	133	137	Right-handed 310
Helix 6	AA6	A	138	142	Right-handed 310
Helix 7	AA7	A	143	157	Right-handed alpha
Helix 8	AA8	A	168	172	Right-handed 310
Helix 9	AA9	A	173	190	Right-handed alpha
Helix 10	AB1	A	200	205	Right-handed alpha
Helix 11	AB2	A	224	239	Right-handed alpha
Helix 12	AB3	A	314	318	Right-handed alpha
Helix 13	AB4	B	3	18	Right-handed alpha
Helix 14	AB5	B	20	26	Right-handed alpha
Helix 15	AB6	B	30	48	Right-handed alpha
Helix 16	AB7	B	55	80	Right-handed alpha
Helix 17	AB8	B	83	88	Right-handed alpha
Helix 18	AB9	B	88	93	Right-handed alpha
Helix 19	AC1	B	101	129	Right-handed alpha
Helix 20	AC2	B	131	137	Right-handed 310
Helix 21	AC3	B	139	163	Right-handed alpha
Helix 22	AC4	B	167	179	Right-handed alpha
Helix 23	AC5	B	180	183	Right-handed 310
Helix 24	AC6	B	188	192	Right-handed 310
Helix 25	AC7	B	196	201	Right-handed alpha
Helix 26	AC8	B	205	217	Right-handed alpha
Helix 27	AC9	B	223	254	Right-handed alpha
Helix 28	AD1	C	18	27	Right-handed alpha
Helix 29	AD2	C	59	69	Right-handed alpha
Helix 30	AD3	C	99	102	Right-handed 310
Helix 31	AD4	C	103	112	Right-handed alpha
Helix 32	AD5	C	114	130	Right-handed alpha
Helix 33	AD6	C	138	142	Right-handed 310
Helix 34	AD7	C	143	157	Right-handed alpha
Helix 35	AD8	C	167	171	Right-handed 310
Helix 36	AD9	C	173	191	Right-handed alpha
Helix 37	AE1	C	201	207	Right-handed alpha
Helix 38	AE2	C	224	240	Right-handed alpha
Helix 39	AE3	D	3	18	Right-handed alpha
Helix 40	AE4	D	22	43	Right-handed alpha
Helix 41	AE5	D	47	51	Right-handed 310
Helix 42	AE6	D	55	80	Right-handed alpha
Helix 43	AE7	D	80	88	Right-handed alpha
Helix 44	AE8	D	88	93	Right-handed alpha
Helix 45	AE9	D	98	100	Right-handed 310
Helix 46	AF1	D	101	129	Right-handed alpha
Helix 47	AF2	D	133	137	Right-handed 310
Helix 48	AF3	D	139	165	Right-handed alpha
Helix 49	AF4	D	167	180	Right-handed alpha
Helix 50	AF5	D	193	201	Right-handed alpha
Helix 51	AF6	D	205	217	Right-handed alpha
Helix 52	AF7	D	226	254	Right-handed alpha

There are 13 sheets in PDB entry 8DNC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	8	first strand
Strand 2	A	75	79	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	13	first strand
Strand 2	A	32	34	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	166	first strand
Strand 2	A	193	197	parallel
Strand 3	A	48	53	parallel
Strand 4	A	210	215	parallel
Strand 5	A	218	223	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	265	first strand
Strand 2	A	279	288	anti-parallel
Strand 3	A	326	335	anti-parallel
Strand 4	C	388	393	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	276	first strand
Strand 2	A	363	374	parallel
Strand 3	A	341	350	anti-parallel
Strand 4	A	296	302	anti-parallel
Strand 5	A	308	313	anti-parallel
Strand 6	C	380	381	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	293	first strand
Strand 2	A	322	323	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	380	381	first strand
Strand 2	C	308	313	anti-parallel
Strand 3	C	297	302	anti-parallel
Strand 4	C	347	349	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	392	first strand
Strand 2	C	329	335	anti-parallel
Strand 3	C	279	288	anti-parallel
Strand 4	C	257	266	anti-parallel
Strand 5	C	269	270	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	392	first strand
Strand 2	C	329	335	anti-parallel
Strand 3	C	279	288	anti-parallel
Strand 4	C	326	327	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	44	first strand
Strand 2	C	2	4	anti-parallel
Strand 3	C	78	80	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	32	35	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	86	first strand
Strand 2	C	162	165	parallel
Strand 3	C	194	197	parallel
Strand 4	C	49	53	parallel
Strand 5	C	211	213	parallel
Strand 6	C	221	223	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	341	342	first strand
Strand 2	C	370	371	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DNC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DNC