Analysis of interatomic Contacts of Structural Units in PDB entry:
8DNG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DNG entry

There are 3 chains in PDB entry 8DNG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 27	GLN 468
D	ILE 27	GLN 468
G	ILE 27	GLN 468

There are 46 helices in PDB entry 8DNG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	37	Right-handed alpha
Helix 2	AA2	A	65	72	Right-handed 310
Helix 3	AA3	A	74	99	Right-handed alpha
Helix 4	AA4	A	125	146	Right-handed alpha
Helix 5	AA5	A	147	154	Right-handed alpha
Helix 6	AA6	A	175	182	Right-handed alpha
Helix 7	AA7	A	191	211	Right-handed alpha
Helix 8	AA8	A	228	232	Right-handed alpha
Helix 9	AA9	A	233	236	Right-handed 310
Helix 10	AB1	A	238	247	Right-handed alpha
Helix 11	AB2	A	252	259	Right-handed alpha
Helix 12	AB3	A	349	357	Right-handed alpha
Helix 13	AB4	A	359	363	Right-handed 310
Helix 14	AB5	A	437	441	Right-handed 310
Helix 15	AB6	A	452	468	Right-handed alpha
Helix 16	AB7	D	29	37	Right-handed alpha
Helix 17	AB8	D	65	69	Right-handed 310
Helix 18	AB9	D	74	100	Right-handed alpha
Helix 19	AC1	D	125	146	Right-handed alpha
Helix 20	AC2	D	147	154	Right-handed alpha
Helix 21	AC3	D	175	182	Right-handed alpha
Helix 22	AC4	D	191	211	Right-handed alpha
Helix 23	AC5	D	228	232	Right-handed alpha
Helix 24	AC6	D	233	236	Right-handed 310
Helix 25	AC7	D	238	247	Right-handed alpha
Helix 26	AC8	D	252	259	Right-handed alpha
Helix 27	AC9	D	328	331	Right-handed 310
Helix 28	AD1	D	349	357	Right-handed alpha
Helix 29	AD2	D	359	363	Right-handed 310
Helix 30	AD3	D	437	441	Right-handed 310
Helix 31	AD4	D	452	468	Right-handed alpha
Helix 32	AD5	G	29	37	Right-handed alpha
Helix 33	AD6	G	65	72	Right-handed 310
Helix 34	AD7	G	74	99	Right-handed alpha
Helix 35	AD8	G	125	146	Right-handed alpha
Helix 36	AD9	G	147	153	Right-handed alpha
Helix 37	AE1	G	175	182	Right-handed alpha
Helix 38	AE2	G	191	211	Right-handed alpha
Helix 39	AE3	G	228	232	Right-handed alpha
Helix 40	AE4	G	233	236	Right-handed 310
Helix 41	AE5	G	238	247	Right-handed alpha
Helix 42	AE6	G	252	259	Right-handed alpha
Helix 43	AE7	G	349	357	Right-handed alpha
Helix 44	AE8	G	358	363	Right-handed 310
Helix 45	AE9	G	437	441	Right-handed 310
Helix 46	AF1	G	452	468	Right-handed alpha

There are 15 sheets in PDB entry 8DNG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	161	first strand
Strand 2	A	169	173	anti-parallel
Strand 3	A	38	60	parallel
Strand 4	A	275	298	anti-parallel
Strand 5	A	337	340	first strand
Strand 6	A	332	333	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	227	first strand
Strand 2	A	263	270	anti-parallel
Strand 3	A	275	298	anti-parallel
Strand 4	A	38	60	anti-parallel
Strand 5	A	315	319	first strand
Strand 6	A	322	326	anti-parallel
Strand 7	A	345	346	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	103	first strand
Strand 2	A	113	116	anti-parallel
Strand 3	G	425	428	parallel
Strand 4	G	419	422	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	124	first strand
Strand 2	G	376	379	anti-parallel
Strand 3	G	382	385	anti-parallel
Strand 4	G	410	412	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	302	first strand
Strand 2	A	307	310	anti-parallel
Strand 3	A	365	367	anti-parallel
Strand 4	A	448	449	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	412	first strand
Strand 2	A	382	385	anti-parallel
Strand 3	A	376	379	anti-parallel
Strand 4	D	122	124	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	394	first strand
Strand 2	A	419	422	anti-parallel
Strand 3	A	425	428	anti-parallel
Strand 4	D	114	116	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	162	first strand
Strand 2	D	168	173	anti-parallel
Strand 3	D	38	60	parallel
Strand 4	D	275	298	anti-parallel
Strand 5	D	337	340	first strand
Strand 6	D	332	333	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	226	227	first strand
Strand 2	D	263	270	anti-parallel
Strand 3	D	275	298	anti-parallel
Strand 4	D	38	60	anti-parallel
Strand 5	D	315	319	first strand
Strand 6	D	322	326	anti-parallel
Strand 7	D	345	346	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	301	302	first strand
Strand 2	D	307	310	anti-parallel
Strand 3	D	365	367	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	410	412	first strand
Strand 2	D	382	385	anti-parallel
Strand 3	D	376	379	anti-parallel
Strand 4	G	122	124	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	399	401	first strand
Strand 2	D	392	394	anti-parallel
Strand 3	D	419	422	anti-parallel
Strand 4	D	425	428	anti-parallel
Strand 5	G	113	116	parallel
Strand 6	G	101	103	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	158	161	first strand
Strand 2	G	169	173	anti-parallel
Strand 3	G	38	60	parallel
Strand 4	G	275	298	anti-parallel
Strand 5	G	337	340	first strand
Strand 6	G	332	333	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	226	227	first strand
Strand 2	G	263	270	anti-parallel
Strand 3	G	275	298	anti-parallel
Strand 4	G	38	60	anti-parallel
Strand 5	G	315	319	first strand
Strand 6	G	322	326	anti-parallel
Strand 7	G	345	346	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	301	303	first strand
Strand 2	G	306	310	anti-parallel
Strand 3	G	365	367	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DNG

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DNG