Analysis of interatomic Contacts of Structural Units in PDB entry:
8DNH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DNH entry

There are 8 chains in PDB entry 8DNH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	GLU 71
A	GLY 73	PHE 374
B	ASP 1	GLU 71
B	GLY 73	PHE 374
C	ASP 1	GLU 71
C	GLY 73	PHE 374
D	ASP 1	GLU 71
D	GLY 73	PHE 374

There are 88 helices in PDB entry 8DNH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	54	60	Right-handed alpha
Helix 2	AA2	A	77	91	Right-handed alpha
Helix 3	AA3	A	111	125	Right-handed alpha
Helix 4	AA4	A	136	145	Right-handed alpha
Helix 5	AA5	A	171	174	Right-handed 310
Helix 6	AA6	A	180	192	Right-handed alpha
Helix 7	AA7	A	193	196	Right-handed 310
Helix 8	AA8	A	201	216	Right-handed alpha
Helix 9	AA9	A	221	232	Right-handed alpha
Helix 10	AB1	A	251	256	Right-handed alpha
Helix 11	AB2	A	257	261	Right-handed 310
Helix 12	AB3	A	262	266	Right-handed 310
Helix 13	AB4	A	272	283	Right-handed alpha
Helix 14	AB5	A	284	287	Right-handed 310
Helix 15	AB6	A	288	294	Right-handed alpha
Helix 16	AB7	A	300	305	Right-handed 310
Helix 17	AB8	A	307	320	Right-handed alpha
Helix 18	AB9	A	333	335	Right-handed 310
Helix 19	AC1	A	336	347	Right-handed alpha
Helix 20	AC2	A	348	352	Right-handed 310
Helix 21	AC3	A	358	365	Right-handed alpha
Helix 22	AC4	A	367	372	Right-handed alpha
Helix 23	AC5	B	54	60	Right-handed alpha
Helix 24	AC6	B	77	91	Right-handed alpha
Helix 25	AC7	B	111	125	Right-handed alpha
Helix 26	AC8	B	136	145	Right-handed alpha
Helix 27	AC9	B	171	174	Right-handed 310
Helix 28	AD1	B	180	192	Right-handed alpha
Helix 29	AD2	B	193	196	Right-handed 310
Helix 30	AD3	B	201	216	Right-handed alpha
Helix 31	AD4	B	221	232	Right-handed alpha
Helix 32	AD5	B	251	256	Right-handed alpha
Helix 33	AD6	B	257	261	Right-handed 310
Helix 34	AD7	B	262	266	Right-handed 310
Helix 35	AD8	B	272	283	Right-handed alpha
Helix 36	AD9	B	284	287	Right-handed 310
Helix 37	AE1	B	288	294	Right-handed alpha
Helix 38	AE2	B	300	305	Right-handed 310
Helix 39	AE3	B	307	320	Right-handed alpha
Helix 40	AE4	B	333	335	Right-handed 310
Helix 41	AE5	B	336	347	Right-handed alpha
Helix 42	AE6	B	348	352	Right-handed 310
Helix 43	AE7	B	359	364	Right-handed alpha
Helix 44	AE8	B	367	372	Right-handed alpha
Helix 45	AE9	C	54	60	Right-handed alpha
Helix 46	AF1	C	77	91	Right-handed alpha
Helix 47	AF2	C	111	125	Right-handed alpha
Helix 48	AF3	C	136	145	Right-handed alpha
Helix 49	AF4	C	171	174	Right-handed 310
Helix 50	AF5	C	180	192	Right-handed alpha
Helix 51	AF6	C	193	196	Right-handed 310
Helix 52	AF7	C	201	216	Right-handed alpha
Helix 53	AF8	C	221	232	Right-handed alpha
Helix 54	AF9	C	251	256	Right-handed alpha
Helix 55	AG1	C	257	261	Right-handed 310
Helix 56	AG2	C	262	266	Right-handed 310
Helix 57	AG3	C	272	283	Right-handed alpha
Helix 58	AG4	C	284	287	Right-handed 310
Helix 59	AG5	C	288	294	Right-handed alpha
Helix 60	AG6	C	300	305	Right-handed 310
Helix 61	AG7	C	307	320	Right-handed alpha
Helix 62	AG8	C	333	335	Right-handed 310
Helix 63	AG9	C	336	347	Right-handed alpha
Helix 64	AH1	C	348	352	Right-handed 310
Helix 65	AH2	C	358	365	Right-handed alpha
Helix 66	AH3	C	367	372	Right-handed alpha
Helix 67	AH4	D	54	60	Right-handed alpha
Helix 68	AH5	D	77	91	Right-handed alpha
Helix 69	AH6	D	111	125	Right-handed alpha
Helix 70	AH7	D	136	145	Right-handed alpha
Helix 71	AH8	D	171	174	Right-handed 310
Helix 72	AH9	D	180	192	Right-handed alpha
Helix 73	AI1	D	193	196	Right-handed 310
Helix 74	AI2	D	201	216	Right-handed alpha
Helix 75	AI3	D	221	232	Right-handed alpha
Helix 76	AI4	D	251	256	Right-handed alpha
Helix 77	AI5	D	257	261	Right-handed 310
Helix 78	AI6	D	262	266	Right-handed 310
Helix 79	AI7	D	272	283	Right-handed alpha
Helix 80	AI8	D	284	287	Right-handed 310
Helix 81	AI9	D	288	294	Right-handed alpha
Helix 82	AJ1	D	300	305	Right-handed 310
Helix 83	AJ2	D	307	320	Right-handed alpha
Helix 84	AJ3	D	333	335	Right-handed 310
Helix 85	AJ4	D	336	347	Right-handed alpha
Helix 86	AJ5	D	348	352	Right-handed 310
Helix 87	AJ6	D	358	365	Right-handed alpha
Helix 88	AJ7	D	367	372	Right-handed alpha

There are 24 sheets in PDB entry 8DNH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	31	first strand
Strand 2	A	15	20	anti-parallel
Strand 3	A	7	11	anti-parallel
Strand 4	A	102	106	parallel
Strand 5	A	130	135	parallel
Strand 6	A	356	357	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	34	37	anti-parallel
Strand 3	A	64	67	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	71	first strand
Strand 2	A	74	75	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	177	first strand
Strand 2	A	159	165	anti-parallel
Strand 3	A	149	154	anti-parallel
Strand 4	A	296	299	parallel
Strand 5	A	328	329	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	177	first strand
Strand 2	A	159	165	anti-parallel
Strand 3	A	168	169	anti-parallel
Strand 4	C	40	41	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	240	first strand
Strand 2	A	246	249	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	31	first strand
Strand 2	B	15	20	anti-parallel
Strand 3	B	7	11	anti-parallel
Strand 4	B	102	106	parallel
Strand 5	B	130	135	parallel
Strand 6	B	356	357	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	53	first strand
Strand 2	B	34	37	anti-parallel
Strand 3	B	64	67	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	71	first strand
Strand 2	B	74	75	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	169	first strand
Strand 2	B	159	165	anti-parallel
Strand 3	B	175	177	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	169	first strand
Strand 2	B	159	165	anti-parallel
Strand 3	B	149	154	anti-parallel
Strand 4	B	296	299	parallel
Strand 5	B	328	329	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	240	first strand
Strand 2	B	246	249	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	31	first strand
Strand 2	C	15	20	anti-parallel
Strand 3	C	7	11	anti-parallel
Strand 4	C	102	106	parallel
Strand 5	C	130	135	parallel
Strand 6	C	356	357	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	34	37	anti-parallel
Strand 3	C	64	67	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	71	first strand
Strand 2	C	74	75	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	169	first strand
Strand 2	C	159	165	anti-parallel
Strand 3	C	175	177	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	169	first strand
Strand 2	C	159	165	anti-parallel
Strand 3	C	149	154	anti-parallel
Strand 4	C	296	299	parallel
Strand 5	C	328	329	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	240	first strand
Strand 2	C	246	249	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	31	first strand
Strand 2	D	15	20	anti-parallel
Strand 3	D	7	11	anti-parallel
Strand 4	D	102	106	parallel
Strand 5	D	130	135	parallel
Strand 6	D	356	357	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	53	first strand
Strand 2	D	34	37	anti-parallel
Strand 3	D	64	67	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	71	first strand
Strand 2	D	74	75	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	168	169	first strand
Strand 2	D	159	165	anti-parallel
Strand 3	D	175	177	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	168	169	first strand
Strand 2	D	159	165	anti-parallel
Strand 3	D	149	154	anti-parallel
Strand 4	D	296	299	parallel
Strand 5	D	328	329	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	240	first strand
Strand 2	D	246	249	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DNH

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DNH