Analysis of interatomic Contacts of Structural Units in PDB entry:
8DNO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DNO entry

There are 4 chains in PDB entry 8DNO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 9	SER 501
B	LEU 9	SER 501
C	LEU 9	SER 501
D	LEU 9	SER 501

There are 76 helices in PDB entry 8DNO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	71	Right-handed alpha
Helix 2	AA2	A	75	80	Right-handed alpha
Helix 3	AA3	A	81	112	Right-handed alpha
Helix 4	AA4	A	114	120	Right-handed alpha
Helix 5	AA5	A	121	135	Right-handed alpha
Helix 6	AA6	A	136	140	Right-handed 310
Helix 7	AA7	A	173	180	Right-handed alpha
Helix 8	AA8	A	181	187	Right-handed alpha
Helix 9	AA9	A	199	213	Right-handed alpha
Helix 10	AB1	A	225	234	Right-handed alpha
Helix 11	AB2	A	247	260	Right-handed alpha
Helix 12	AB3	A	283	297	Right-handed alpha
Helix 13	AB4	A	315	329	Right-handed alpha
Helix 14	AB5	A	347	364	Right-handed alpha
Helix 15	AB6	A	394	398	Right-handed 310
Helix 16	AB7	A	413	422	Right-handed alpha
Helix 17	AB8	A	436	447	Right-handed alpha
Helix 18	AB9	A	469	473	Right-handed 310
Helix 19	AC1	A	480	484	Right-handed 310
Helix 20	AC2	B	56	71	Right-handed alpha
Helix 21	AC3	B	75	80	Right-handed alpha
Helix 22	AC4	B	81	112	Right-handed alpha
Helix 23	AC5	B	114	120	Right-handed alpha
Helix 24	AC6	B	121	135	Right-handed alpha
Helix 25	AC7	B	136	140	Right-handed 310
Helix 26	AC8	B	173	180	Right-handed alpha
Helix 27	AC9	B	181	187	Right-handed alpha
Helix 28	AD1	B	199	213	Right-handed alpha
Helix 29	AD2	B	225	234	Right-handed alpha
Helix 30	AD3	B	247	260	Right-handed alpha
Helix 31	AD4	B	283	297	Right-handed alpha
Helix 32	AD5	B	315	329	Right-handed alpha
Helix 33	AD6	B	347	364	Right-handed alpha
Helix 34	AD7	B	394	398	Right-handed 310
Helix 35	AD8	B	413	422	Right-handed alpha
Helix 36	AD9	B	436	447	Right-handed alpha
Helix 37	AE1	B	469	473	Right-handed 310
Helix 38	AE2	B	480	484	Right-handed 310
Helix 39	AE3	C	56	71	Right-handed alpha
Helix 40	AE4	C	75	80	Right-handed alpha
Helix 41	AE5	C	81	112	Right-handed alpha
Helix 42	AE6	C	114	120	Right-handed alpha
Helix 43	AE7	C	121	135	Right-handed alpha
Helix 44	AE8	C	136	140	Right-handed 310
Helix 45	AE9	C	173	180	Right-handed alpha
Helix 46	AF1	C	181	187	Right-handed alpha
Helix 47	AF2	C	199	213	Right-handed alpha
Helix 48	AF3	C	225	234	Right-handed alpha
Helix 49	AF4	C	247	260	Right-handed alpha
Helix 50	AF5	C	283	297	Right-handed alpha
Helix 51	AF6	C	315	329	Right-handed alpha
Helix 52	AF7	C	347	364	Right-handed alpha
Helix 53	AF8	C	394	398	Right-handed 310
Helix 54	AF9	C	413	422	Right-handed alpha
Helix 55	AG1	C	436	447	Right-handed alpha
Helix 56	AG2	C	469	473	Right-handed 310
Helix 57	AG3	C	480	484	Right-handed 310
Helix 58	AG4	D	56	71	Right-handed alpha
Helix 59	AG5	D	75	80	Right-handed alpha
Helix 60	AG6	D	81	112	Right-handed alpha
Helix 61	AG7	D	114	120	Right-handed alpha
Helix 62	AG8	D	121	135	Right-handed alpha
Helix 63	AG9	D	136	140	Right-handed 310
Helix 64	AH1	D	173	180	Right-handed alpha
Helix 65	AH2	D	181	187	Right-handed alpha
Helix 66	AH3	D	199	213	Right-handed alpha
Helix 67	AH4	D	225	234	Right-handed alpha
Helix 68	AH5	D	247	260	Right-handed alpha
Helix 69	AH6	D	283	297	Right-handed alpha
Helix 70	AH7	D	315	329	Right-handed alpha
Helix 71	AH8	D	347	364	Right-handed alpha
Helix 72	AH9	D	394	398	Right-handed 310
Helix 73	AI1	D	413	422	Right-handed alpha
Helix 74	AI2	D	436	447	Right-handed alpha
Helix 75	AI3	D	469	473	Right-handed 310
Helix 76	AI4	D	480	484	Right-handed 310

There are 12 sheets in PDB entry 8DNO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	41	first strand
Strand 2	A	48	50	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	159	first strand
Strand 2	A	487	494	anti-parallel
Strand 3	B	451	454	parallel
Strand 4	B	429	433	parallel
Strand 5	B	276	278	parallel
Strand 6	B	309	312	parallel
Strand 7	B	406	411	parallel
Strand 8	B	386	388	parallel
Strand 9	B	367	370	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	221	first strand
Strand 2	A	189	193	parallel
Strand 3	A	162	166	parallel
Strand 4	A	239	244	parallel
Strand 5	A	265	268	parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	370	first strand
Strand 2	A	386	388	anti-parallel
Strand 3	A	406	411	parallel
Strand 4	A	309	312	parallel
Strand 5	A	276	278	parallel
Strand 6	A	429	433	parallel
Strand 7	A	451	454	parallel
Strand 8	B	487	494	parallel
Strand 9	B	152	159	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	41	first strand
Strand 2	B	48	50	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	221	first strand
Strand 2	B	189	193	parallel
Strand 3	B	162	166	parallel
Strand 4	B	239	244	parallel
Strand 5	B	265	268	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	41	first strand
Strand 2	C	48	50	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	159	first strand
Strand 2	C	487	494	anti-parallel
Strand 3	D	451	454	parallel
Strand 4	D	429	433	parallel
Strand 5	D	276	278	parallel
Strand 6	D	309	312	parallel
Strand 7	D	406	411	parallel
Strand 8	D	386	388	parallel
Strand 9	D	367	370	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	221	first strand
Strand 2	C	189	193	parallel
Strand 3	C	162	166	parallel
Strand 4	C	239	244	parallel
Strand 5	C	265	268	parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	367	370	first strand
Strand 2	C	386	388	anti-parallel
Strand 3	C	406	411	parallel
Strand 4	C	309	312	parallel
Strand 5	C	276	278	parallel
Strand 6	C	429	433	parallel
Strand 7	C	451	454	parallel
Strand 8	D	487	494	parallel
Strand 9	D	152	159	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	41	first strand
Strand 2	D	48	50	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	219	221	first strand
Strand 2	D	189	193	parallel
Strand 3	D	162	166	parallel
Strand 4	D	239	244	parallel
Strand 5	D	265	268	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DNO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DNO