Analysis of interatomic Contacts of Structural Units in PDB entry:
8DNS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DNS entry

There are 4 chains in PDB entry 8DNS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
O	LYS 3	GLU 335
P	LYS 3	GLU 335
Q	LYS 3	GLU 335
R	LYS 3	GLU 335

There are 40 helices in PDB entry 8DNS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	O	12	26	Right-handed alpha
Helix 2	AA2	O	39	48	Right-handed alpha
Helix 3	AA3	O	104	115	Right-handed alpha
Helix 4	AA4	O	136	140	Right-handed 310
Helix 5	AA5	O	151	168	Right-handed alpha
Helix 6	AA6	O	195	200	Right-handed alpha
Helix 7	AA7	O	212	221	Right-handed alpha
Helix 8	AA8	O	254	268	Right-handed alpha
Helix 9	AA9	O	282	287	Right-handed 310
Helix 10	AB1	O	316	335	Right-handed alpha
Helix 11	AB2	P	12	26	Right-handed alpha
Helix 12	AB3	P	39	48	Right-handed alpha
Helix 13	AB4	P	104	115	Right-handed alpha
Helix 14	AB5	P	136	140	Right-handed 310
Helix 15	AB6	P	151	168	Right-handed alpha
Helix 16	AB7	P	195	200	Right-handed alpha
Helix 17	AB8	P	212	221	Right-handed alpha
Helix 18	AB9	P	254	268	Right-handed alpha
Helix 19	AC1	P	282	287	Right-handed 310
Helix 20	AC2	P	316	335	Right-handed alpha
Helix 21	AC3	Q	12	26	Right-handed alpha
Helix 22	AC4	Q	39	48	Right-handed alpha
Helix 23	AC5	Q	104	115	Right-handed alpha
Helix 24	AC6	Q	136	140	Right-handed 310
Helix 25	AC7	Q	151	168	Right-handed alpha
Helix 26	AC8	Q	195	200	Right-handed alpha
Helix 27	AC9	Q	212	221	Right-handed alpha
Helix 28	AD1	Q	254	268	Right-handed alpha
Helix 29	AD2	Q	282	287	Right-handed 310
Helix 30	AD3	Q	316	335	Right-handed alpha
Helix 31	AD4	R	12	26	Right-handed alpha
Helix 32	AD5	R	39	48	Right-handed alpha
Helix 33	AD6	R	104	115	Right-handed alpha
Helix 34	AD7	R	136	140	Right-handed 310
Helix 35	AD8	R	151	168	Right-handed alpha
Helix 36	AD9	R	195	200	Right-handed alpha
Helix 37	AE1	R	212	221	Right-handed alpha
Helix 38	AE2	R	254	268	Right-handed alpha
Helix 39	AE3	R	282	287	Right-handed 310
Helix 40	AE4	R	316	335	Right-handed alpha

There are 12 sheets in PDB entry 8DNS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	60	63	first strand
Strand 2	O	66	69	anti-parallel
Strand 3	O	72	77	anti-parallel
Strand 4	O	29	34	parallel
Strand 5	O	5	9	parallel
Strand 6	O	94	97	parallel
Strand 7	O	118	121	parallel
Strand 8	O	146	148	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	49	50	first strand
Strand 2	O	54	55	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	207	209	first strand
Strand 2	O	228	234	anti-parallel
Strand 3	O	170	179	parallel
Strand 4	O	240	249	anti-parallel
Strand 5	O	307	315	anti-parallel
Strand 6	O	293	296	anti-parallel
Strand 7	O	274	277	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	60	63	first strand
Strand 2	P	66	69	anti-parallel
Strand 3	P	72	77	anti-parallel
Strand 4	P	29	34	parallel
Strand 5	P	5	9	parallel
Strand 6	P	94	97	parallel
Strand 7	P	118	121	parallel
Strand 8	P	146	148	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	49	50	first strand
Strand 2	P	54	55	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	207	209	first strand
Strand 2	P	228	234	anti-parallel
Strand 3	P	170	179	parallel
Strand 4	P	240	249	anti-parallel
Strand 5	P	307	315	anti-parallel
Strand 6	P	293	296	anti-parallel
Strand 7	P	274	277	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	60	63	first strand
Strand 2	Q	66	69	anti-parallel
Strand 3	Q	72	77	anti-parallel
Strand 4	Q	29	34	parallel
Strand 5	Q	5	9	parallel
Strand 6	Q	94	97	parallel
Strand 7	Q	118	121	parallel
Strand 8	Q	146	148	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	49	50	first strand
Strand 2	Q	54	55	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	207	209	first strand
Strand 2	Q	228	234	anti-parallel
Strand 3	Q	170	179	parallel
Strand 4	Q	240	249	anti-parallel
Strand 5	Q	307	315	anti-parallel
Strand 6	Q	293	296	anti-parallel
Strand 7	Q	274	277	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	60	63	first strand
Strand 2	R	66	69	anti-parallel
Strand 3	R	72	77	anti-parallel
Strand 4	R	29	34	parallel
Strand 5	R	5	9	parallel
Strand 6	R	94	97	parallel
Strand 7	R	118	121	parallel
Strand 8	R	146	148	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	49	50	first strand
Strand 2	R	54	55	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	207	209	first strand
Strand 2	R	228	234	anti-parallel
Strand 3	R	170	179	parallel
Strand 4	R	240	249	anti-parallel
Strand 5	R	307	315	anti-parallel
Strand 6	R	293	296	anti-parallel
Strand 7	R	274	277	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DNS

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DNS