Analysis of interatomic Contacts of Structural Units in PDB entry:
8DNY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DNY entry

There are 4 chains in PDB entry 8DNY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 5VAL 468
B
 GLN 6VAL 66
C
 GLY 65SER 96
D
 ALA 1ALA 1
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8DNY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 14Right-handed alpha
Helix 2
AA2
A
27 48Right-handed alpha
Helix 3
AA3
A
81 97Right-handed alpha
Helix 4
AA4
A
105 134Right-handed alpha
Helix 5
AA5
A
139 171Right-handed alpha
Helix 6
AA6
A
177 197Right-handed alpha
Helix 7
AA7
A
211 223Right-handed alpha
Helix 8
AA8
A
226 236Right-handed alpha
Helix 9
AA9
A
241 260Right-handed alpha
Helix 10
AB1
A
288 312Right-handed alpha
Helix 11
AB2
A
315 322Right-handed alpha
Helix 12
AB3
A
340 345Right-handed alpha
Helix 13
AB4
A
350 357Right-handed alpha
Helix 14
AB5
A
357 383Right-handed alpha
Helix 15
AB6
A
386 396Right-handed alpha
Helix 16
AB7
A
405 407Right-handed 310
Helix 17
AB8
A
408 439Right-handed alpha
Helix 18
AB9
A
442 468Right-handed alpha
Helix 19
AC1
B
7 25Right-handed alpha
Helix 20
AC2
B
29 66Right-handed alpha
Helix 21
AC3
C
69 96Right-handed alpha
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There are 3 sheets in PDB entry 8DNY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
C
67 68parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 282first strand
Strand 2
A
262 269anti-parallel
Strand 3
A
399 401anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 324first strand
Strand 2
A
337 339anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il