Analysis of interatomic Contacts of Structural Units in PDB entry:
8DNZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DNZ entry

There are 3 chains in PDB entry 8DNZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLN 6VAL 66
C
 GLY 65SER 96
A
 ILE 3VAL 468
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 8DNZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
7 25Right-handed alpha
Helix 2
AA2
B
29 66Right-handed alpha
Helix 3
AA3
C
69 96Right-handed alpha
Helix 4
AA4
A
4 9Right-handed alpha
Helix 5
AA5
A
9 14Right-handed alpha
Helix 6
AA6
A
27 46Right-handed alpha
Helix 7
AA7
A
62 66Right-handed 310
Helix 8
AA8
A
81 97Right-handed alpha
Helix 9
AA9
A
105 134Right-handed alpha
Helix 10
AB1
A
139 144Right-handed alpha
Helix 11
AB2
A
144 171Right-handed alpha
Helix 12
AB3
A
177 197Right-handed alpha
Helix 13
AB4
A
211 223Right-handed alpha
Helix 14
AB5
A
226 235Right-handed alpha
Helix 15
AB6
A
241 260Right-handed alpha
Helix 16
AB7
A
288 312Right-handed alpha
Helix 17
AB8
A
315 322Right-handed alpha
Helix 18
AB9
A
340 345Right-handed alpha
Helix 19
AC1
A
350 357Right-handed alpha
Helix 20
AC2
A
357 381Right-handed alpha
Helix 21
AC3
A
386 398Right-handed alpha
Helix 22
AC4
A
409 438Right-handed alpha
Helix 23
AC5
A
442 468Right-handed alpha
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There are 4 sheets in PDB entry 8DNZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
67 68first strand
Strand 2
A
18 19parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 202first strand
Strand 2
A
207 209anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 282first strand
Strand 2
A
262 269anti-parallel
Strand 3
A
399 401anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 325first strand
Strand 2
A
336 339anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il