Analysis of interatomic Contacts of Structural Units in PDB entry:
8DO4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DO4 entry

There are 6 chains in PDB entry 8DO4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 27	GLN 468
B	ILE 27	GLN 468
C	ILE 27	GLN 468
D	ILE 27	GLN 468
E	ILE 27	GLN 468
G	ILE 27	GLN 468

There are 96 helices in PDB entry 8DO4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	37	Right-handed alpha
Helix 2	AA2	A	68	72	Right-handed 310
Helix 3	AA3	A	74	99	Right-handed alpha
Helix 4	AA4	A	125	146	Right-handed alpha
Helix 5	AA5	A	147	153	Right-handed alpha
Helix 6	AA6	A	175	182	Right-handed alpha
Helix 7	AA7	A	191	211	Right-handed alpha
Helix 8	AA8	A	228	232	Right-handed alpha
Helix 9	AA9	A	233	236	Right-handed 310
Helix 10	AB1	A	238	247	Right-handed alpha
Helix 11	AB2	A	252	259	Right-handed alpha
Helix 12	AB3	A	349	357	Right-handed alpha
Helix 13	AB4	A	359	363	Right-handed 310
Helix 14	AB5	A	437	441	Right-handed 310
Helix 15	AB6	A	452	468	Right-handed alpha
Helix 16	AB7	B	29	37	Right-handed alpha
Helix 17	AB8	B	65	72	Right-handed 310
Helix 18	AB9	B	74	99	Right-handed alpha
Helix 19	AC1	B	117	121	Right-handed alpha
Helix 20	AC2	B	125	146	Right-handed alpha
Helix 21	AC3	B	147	154	Right-handed alpha
Helix 22	AC4	B	175	182	Right-handed alpha
Helix 23	AC5	B	191	211	Right-handed alpha
Helix 24	AC6	B	228	232	Right-handed alpha
Helix 25	AC7	B	233	236	Right-handed 310
Helix 26	AC8	B	238	247	Right-handed alpha
Helix 27	AC9	B	252	259	Right-handed alpha
Helix 28	AD1	B	349	357	Right-handed alpha
Helix 29	AD2	B	359	363	Right-handed 310
Helix 30	AD3	B	437	441	Right-handed 310
Helix 31	AD4	B	452	468	Right-handed alpha
Helix 32	AD5	C	29	37	Right-handed alpha
Helix 33	AD6	C	68	72	Right-handed 310
Helix 34	AD7	C	74	99	Right-handed alpha
Helix 35	AD8	C	117	121	Right-handed alpha
Helix 36	AD9	C	125	146	Right-handed alpha
Helix 37	AE1	C	147	153	Right-handed alpha
Helix 38	AE2	C	175	182	Right-handed alpha
Helix 39	AE3	C	191	211	Right-handed alpha
Helix 40	AE4	C	228	232	Right-handed alpha
Helix 41	AE5	C	233	236	Right-handed 310
Helix 42	AE6	C	238	247	Right-handed alpha
Helix 43	AE7	C	252	259	Right-handed alpha
Helix 44	AE8	C	328	331	Right-handed 310
Helix 45	AE9	C	349	357	Right-handed alpha
Helix 46	AF1	C	359	363	Right-handed 310
Helix 47	AF2	C	437	441	Right-handed 310
Helix 48	AF3	C	452	468	Right-handed alpha
Helix 49	AF4	D	29	37	Right-handed alpha
Helix 50	AF5	D	65	69	Right-handed 310
Helix 51	AF6	D	74	99	Right-handed alpha
Helix 52	AF7	D	117	121	Right-handed alpha
Helix 53	AF8	D	125	147	Right-handed alpha
Helix 54	AF9	D	147	154	Right-handed alpha
Helix 55	AG1	D	176	182	Right-handed alpha
Helix 56	AG2	D	191	215	Right-handed alpha
Helix 57	AG3	D	228	232	Right-handed alpha
Helix 58	AG4	D	233	236	Right-handed 310
Helix 59	AG5	D	238	247	Right-handed alpha
Helix 60	AG6	D	252	259	Right-handed alpha
Helix 61	AG7	D	328	331	Right-handed 310
Helix 62	AG8	D	349	358	Right-handed alpha
Helix 63	AG9	D	359	363	Right-handed 310
Helix 64	AH1	D	437	441	Right-handed 310
Helix 65	AH2	D	452	468	Right-handed alpha
Helix 66	AH3	E	29	35	Right-handed alpha
Helix 67	AH4	E	65	72	Right-handed 310
Helix 68	AH5	E	74	99	Right-handed alpha
Helix 69	AH6	E	125	146	Right-handed alpha
Helix 70	AH7	E	147	153	Right-handed alpha
Helix 71	AH8	E	175	182	Right-handed alpha
Helix 72	AH9	E	191	212	Right-handed alpha
Helix 73	AI1	E	228	232	Right-handed alpha
Helix 74	AI2	E	233	236	Right-handed 310
Helix 75	AI3	E	238	247	Right-handed alpha
Helix 76	AI4	E	252	259	Right-handed alpha
Helix 77	AI5	E	349	357	Right-handed alpha
Helix 78	AI6	E	358	363	Right-handed 310
Helix 79	AI7	E	437	441	Right-handed 310
Helix 80	AI8	E	452	468	Right-handed alpha
Helix 81	AI9	G	29	36	Right-handed alpha
Helix 82	AJ1	G	68	72	Right-handed 310
Helix 83	AJ2	G	74	99	Right-handed alpha
Helix 84	AJ3	G	125	146	Right-handed alpha
Helix 85	AJ4	G	147	153	Right-handed alpha
Helix 86	AJ5	G	175	188	Right-handed alpha
Helix 87	AJ6	G	194	211	Right-handed alpha
Helix 88	AJ7	G	228	232	Right-handed alpha
Helix 89	AJ8	G	233	236	Right-handed 310
Helix 90	AJ9	G	238	246	Right-handed alpha
Helix 91	AK1	G	252	259	Right-handed alpha
Helix 92	AK2	G	349	356	Right-handed alpha
Helix 93	AK3	G	357	358	Right-handed 310
Helix 94	AK4	G	359	363	Right-handed 310
Helix 95	AK5	G	437	441	Right-handed 310
Helix 96	AK6	G	452	468	Right-handed alpha

There are 33 sheets in PDB entry 8DO4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	164	first strand
Strand 2	A	167	173	anti-parallel
Strand 3	A	38	60	parallel
Strand 4	A	275	298	anti-parallel
Strand 5	A	337	340	first strand
Strand 6	A	332	333	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	270	first strand
Strand 2	A	275	298	anti-parallel
Strand 3	A	38	60	anti-parallel
Strand 4	A	315	319	first strand
Strand 5	A	322	326	anti-parallel
Strand 6	A	345	346	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	103	first strand
Strand 2	A	113	116	anti-parallel
Strand 3	G	425	428	parallel
Strand 4	G	419	422	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	124	first strand
Strand 2	G	376	379	anti-parallel
Strand 3	G	382	385	anti-parallel
Strand 4	G	410	412	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	227	first strand
Strand 2	A	263	264	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	303	first strand
Strand 2	A	306	310	anti-parallel
Strand 3	A	365	367	anti-parallel
Strand 4	A	448	449	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	412	first strand
Strand 2	A	382	385	anti-parallel
Strand 3	A	376	379	anti-parallel
Strand 4	D	123	124	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	394	first strand
Strand 2	A	419	422	anti-parallel
Strand 3	A	425	428	anti-parallel
Strand 4	D	113	116	parallel
Strand 5	D	101	103	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	164	first strand
Strand 2	B	167	173	anti-parallel
Strand 3	B	38	60	parallel
Strand 4	B	275	298	anti-parallel
Strand 5	B	337	340	first strand
Strand 6	B	332	333	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	227	first strand
Strand 2	B	263	270	anti-parallel
Strand 3	B	275	298	anti-parallel
Strand 4	B	38	60	anti-parallel
Strand 5	B	315	319	first strand
Strand 6	B	322	326	anti-parallel
Strand 7	B	345	346	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	103	first strand
Strand 2	B	113	116	anti-parallel
Strand 3	E	425	428	parallel
Strand 4	E	419	422	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	124	first strand
Strand 2	E	376	379	anti-parallel
Strand 3	E	382	385	anti-parallel
Strand 4	E	410	412	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	302	first strand
Strand 2	B	307	310	anti-parallel
Strand 3	B	365	367	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	412	first strand
Strand 2	B	382	385	anti-parallel
Strand 3	B	376	379	anti-parallel
Strand 4	C	122	124	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	393	394	first strand
Strand 2	B	419	422	anti-parallel
Strand 3	B	425	428	anti-parallel
Strand 4	C	114	116	parallel
Strand 5	C	101	102	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	162	first strand
Strand 2	C	168	173	anti-parallel
Strand 3	C	38	60	parallel
Strand 4	C	275	298	anti-parallel
Strand 5	C	337	340	first strand
Strand 6	C	332	333	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	227	first strand
Strand 2	C	263	269	anti-parallel
Strand 3	C	275	298	anti-parallel
Strand 4	C	38	60	anti-parallel
Strand 5	C	315	319	first strand
Strand 6	C	322	326	anti-parallel
Strand 7	C	345	346	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	302	first strand
Strand 2	C	307	310	anti-parallel
Strand 3	C	365	367	anti-parallel
Strand 4	C	448	449	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	410	412	first strand
Strand 2	C	382	385	anti-parallel
Strand 3	C	376	379	anti-parallel
Strand 4	E	123	124	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	399	401	first strand
Strand 2	C	392	394	anti-parallel
Strand 3	C	419	422	anti-parallel
Strand 4	C	425	428	anti-parallel
Strand 5	E	114	116	parallel
Strand 6	E	101	102	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	164	first strand
Strand 2	D	167	173	anti-parallel
Strand 3	D	38	60	parallel
Strand 4	D	275	298	anti-parallel
Strand 5	D	337	340	first strand
Strand 6	D	332	333	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	226	227	first strand
Strand 2	D	263	270	anti-parallel
Strand 3	D	275	298	anti-parallel
Strand 4	D	38	60	anti-parallel
Strand 5	D	315	319	first strand
Strand 6	D	322	326	anti-parallel
Strand 7	D	345	346	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	301	303	first strand
Strand 2	D	306	310	anti-parallel
Strand 3	D	365	367	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	410	412	first strand
Strand 2	D	382	385	anti-parallel
Strand 3	D	376	379	anti-parallel
Strand 4	G	123	124	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	399	401	first strand
Strand 2	D	392	394	anti-parallel
Strand 3	D	419	422	anti-parallel
Strand 4	D	425	428	anti-parallel
Strand 5	G	114	116	parallel
Strand 6	G	101	102	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	158	161	first strand
Strand 2	E	169	173	anti-parallel
Strand 3	E	38	60	parallel
Strand 4	E	275	298	anti-parallel
Strand 5	E	337	340	first strand
Strand 6	E	332	333	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	266	270	first strand
Strand 2	E	275	298	anti-parallel
Strand 3	E	38	60	anti-parallel
Strand 4	E	315	319	first strand
Strand 5	E	322	326	anti-parallel
Strand 6	E	345	346	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	226	227	first strand
Strand 2	E	263	264	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	301	303	first strand
Strand 2	E	306	310	anti-parallel
Strand 3	E	365	367	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	158	162	first strand
Strand 2	G	168	173	anti-parallel
Strand 3	G	38	60	parallel
Strand 4	G	275	298	anti-parallel
Strand 5	G	337	340	first strand
Strand 6	G	332	333	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	226	227	first strand
Strand 2	G	263	269	anti-parallel
Strand 3	G	275	298	anti-parallel
Strand 4	G	38	60	anti-parallel
Strand 5	G	315	319	first strand
Strand 6	G	322	326	anti-parallel
Strand 7	G	345	346	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	301	303	first strand
Strand 2	G	306	310	anti-parallel
Strand 3	G	365	367	anti-parallel
Strand 4	G	448	449	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	392	394	first strand
Strand 2	G	399	401	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DO4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DO4