Analysis of interatomic Contacts of Structural Units in PDB entry:
8DO5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DO5 entry

There are 2 chains in PDB entry 8DO5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 9SER 330
B
 THR 8LYS 331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 8DO5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 16Right-handed 310
Helix 2
AA2
A
41 55Right-handed alpha
Helix 3
AA3
A
73 89Right-handed alpha
Helix 4
AA4
A
102 117Right-handed alpha
Helix 5
AA5
A
132 147Right-handed alpha
Helix 6
AA6
A
157 162Right-handed alpha
Helix 7
AA7
A
166 174Right-handed alpha
Helix 8
AA8
A
189 197Right-handed alpha
Helix 9
AA9
A
205 216Right-handed alpha
Helix 10
AB1
A
226 231Right-handed 310
Helix 11
AB2
A
232 249Right-handed alpha
Helix 12
AB3
A
251 266Right-handed alpha
Helix 13
AB4
A
269 272Right-handed 310
Helix 14
AB5
A
273 280Right-handed alpha
Helix 15
AB6
A
280 293Right-handed alpha
Helix 16
AB7
A
308 329Right-handed alpha
Helix 17
AB8
B
12 16Right-handed 310
Helix 18
AB9
B
41 56Right-handed alpha
Helix 19
AC1
B
73 89Right-handed alpha
Helix 20
AC2
B
102 117Right-handed alpha
Helix 21
AC3
B
132 147Right-handed alpha
Helix 22
AC4
B
157 162Right-handed alpha
Helix 23
AC5
B
166 174Right-handed alpha
Helix 24
AC6
B
189 197Right-handed alpha
Helix 25
AC7
B
205 216Right-handed alpha
Helix 26
AC8
B
226 231Right-handed 310
Helix 27
AC9
B
232 249Right-handed alpha
Helix 28
AD1
B
251 265Right-handed alpha
Helix 29
AD2
B
269 272Right-handed 310
Helix 30
AD3
B
273 279Right-handed alpha
Helix 31
AD4
B
280 293Right-handed alpha
Helix 32
AD5
B
308 329Right-handed alpha
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There are 4 sheets in PDB entry 8DO5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 62first strand
Strand 2
A
18 23parallel
Strand 3
A
222 225parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 97first strand
Strand 2
A
120 123parallel
Strand 3
A
151 155parallel
Strand 4
A
179 183parallel
Strand 5
A
201 203parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 62first strand
Strand 2
B
18 23parallel
Strand 3
B
222 225parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 97first strand
Strand 2
B
120 123parallel
Strand 3
B
151 155parallel
Strand 4
B
179 183parallel
Strand 5
B
201 203parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il