Analysis of interatomic Contacts of Structural Units in PDB entry:
8DO6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DO6 entry

There are 9 chains in PDB entry 8DO6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	TYR 2	LYS 214
G	TYR 2	LYS 214
F	TYR 2	LYS 214
I	A 1	A 35
J	G 10	U 35
C	PHE 16	TYR 136
D	THR 15	TYR 136
B	THR 5	GLU 303
H	THR 2	LEU 335

There are 49 helices in PDB entry 8DO6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	47	65	Right-handed alpha
Helix 2	AA2	E	76	84	Right-handed alpha
Helix 3	AA3	E	104	114	Right-handed alpha
Helix 4	AA4	E	158	160	Right-handed 310
Helix 5	AA5	E	161	178	Right-handed alpha
Helix 6	AA6	G	47	64	Right-handed alpha
Helix 7	AA7	G	76	84	Right-handed alpha
Helix 8	AA8	G	104	113	Right-handed alpha
Helix 9	AA9	G	158	160	Right-handed 310
Helix 10	AB1	G	161	178	Right-handed alpha
Helix 11	AB2	G	184	188	Right-handed 310
Helix 12	AB3	F	47	64	Right-handed alpha
Helix 13	AB4	F	76	84	Right-handed alpha
Helix 14	AB5	F	104	114	Right-handed alpha
Helix 15	AB6	F	161	179	Right-handed alpha
Helix 16	AB7	F	184	188	Right-handed 310
Helix 17	AB8	C	17	24	Right-handed alpha
Helix 18	AB9	C	44	65	Right-handed alpha
Helix 19	AC1	C	71	92	Right-handed alpha
Helix 20	AC2	C	92	102	Right-handed alpha
Helix 21	AC3	C	103	115	Right-handed alpha
Helix 22	AC4	C	116	136	Right-handed alpha
Helix 23	AC5	D	16	24	Right-handed alpha
Helix 24	AC6	D	44	65	Right-handed alpha
Helix 25	AC7	D	71	92	Right-handed alpha
Helix 26	AC8	D	92	102	Right-handed alpha
Helix 27	AC9	D	103	115	Right-handed alpha
Helix 28	AD1	D	116	136	Right-handed alpha
Helix 29	AD2	B	31	47	Right-handed alpha
Helix 30	AD3	B	50	56	Right-handed alpha
Helix 31	AD4	B	100	105	Right-handed alpha
Helix 32	AD5	B	110	121	Right-handed alpha
Helix 33	AD6	B	134	140	Right-handed alpha
Helix 34	AD7	B	168	186	Right-handed alpha
Helix 35	AD8	B	205	213	Right-handed alpha
Helix 36	AD9	B	232	236	Right-handed 310
Helix 37	AE1	H	42	53	Right-handed alpha
Helix 38	AE2	H	55	64	Right-handed alpha
Helix 39	AE3	H	74	83	Right-handed alpha
Helix 40	AE4	H	85	91	Right-handed 310
Helix 41	AE5	H	130	147	Right-handed alpha
Helix 42	AE6	H	167	169	Right-handed 310
Helix 43	AE7	H	211	230	Right-handed alpha
Helix 44	AE8	H	231	236	Right-handed 310
Helix 45	AE9	H	237	246	Right-handed alpha
Helix 46	AF1	H	266	270	Right-handed 310
Helix 47	AF2	H	271	276	Right-handed alpha
Helix 48	AF3	H	277	293	Right-handed alpha
Helix 49	AF4	H	296	300	Right-handed 310

There are 20 sheets in PDB entry 8DO6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	102	103	first strand
Strand 2	E	147	149	anti-parallel
Strand 3	E	3	13	anti-parallel
Strand 4	E	192	203	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	102	103	first strand
Strand 2	E	147	149	anti-parallel
Strand 3	E	3	13	anti-parallel
Strand 4	E	152	156	anti-parallel
Strand 5	E	96	99	anti-parallel
Strand 6	B	193	194	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	125	first strand
Strand 2	E	136	142	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	46	first strand
Strand 2	G	101	103	anti-parallel
Strand 3	G	147	156	anti-parallel
Strand 4	G	96	97	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	46	first strand
Strand 2	G	101	103	anti-parallel
Strand 3	G	147	156	anti-parallel
Strand 4	G	3	13	anti-parallel
Strand 5	G	192	203	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	122	123	first strand
Strand 2	G	138	139	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	96	97	first strand
Strand 2	F	147	155	anti-parallel
Strand 3	F	101	103	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	96	97	first strand
Strand 2	F	147	155	anti-parallel
Strand 3	F	4	13	anti-parallel
Strand 4	F	192	203	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	119	120	first strand
Strand 2	F	141	142	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	123	124	first strand
Strand 2	F	137	138	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	26	first strand
Strand 2	D	38	39	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	59	first strand
Strand 2	B	159	166	anti-parallel
Strand 3	B	63	66	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	59	first strand
Strand 2	B	159	166	anti-parallel
Strand 3	B	6	12	anti-parallel
Strand 4	B	198	202	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	73	first strand
Strand 2	B	95	97	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	133	first strand
Strand 2	B	146	155	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	246	first strand
Strand 2	B	265	268	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	284	first strand
Strand 2	B	294	297	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	159	160	first strand
Strand 2	H	198	206	anti-parallel
Strand 3	H	3	11	anti-parallel
Strand 4	H	327	335	anti-parallel
Strand 5	H	257	259	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	24	first strand
Strand 2	H	116	119	anti-parallel
Strand 3	H	183	193	parallel
Strand 4	H	171	179	anti-parallel
Strand 5	H	93	100	parallel
Strand 6	H	37	41	anti-parallel
Strand 7	H	29	31	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	24	first strand
Strand 2	H	116	119	anti-parallel
Strand 3	H	183	193	parallel
Strand 4	H	171	179	anti-parallel
Strand 5	H	311	316	anti-parallel
Strand 6	H	321	324	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DO6

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DO6