Analysis of interatomic Contacts of Structural Units in PDB entry:
8DO8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DO8 entry

There are 6 chains in PDB entry 8DO8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 3GLN 195
B
 LEU 5MET 196
C
 CYS 3ASP 198
D
 LEU 5ALA 194
E
 ASP 830VAL 839
F
 LEU 832VAL 839
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8DO8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 15Right-handed 310
Helix 2
AA2
A
16 32Right-handed alpha
Helix 3
AA3
A
69 87Right-handed alpha
Helix 4
AA4
A
139 161Right-handed alpha
Helix 5
AA5
A
173 177Right-handed 310
Helix 6
AA6
B
6 31Right-handed alpha
Helix 7
AA7
B
49 53Right-handed 310
Helix 8
AA8
B
58 70Right-handed alpha
Helix 9
AA9
B
115 133Right-handed alpha
Helix 10
AB1
B
135 143Right-handed alpha
Helix 11
AB2
C
16 32Right-handed alpha
Helix 12
AB3
C
69 91Right-handed alpha
Helix 13
AB4
C
137 160Right-handed alpha
Helix 14
AB5
C
173 177Right-handed 310
Helix 15
AB6
D
6 31Right-handed alpha
Helix 16
AB7
D
49 53Right-handed 310
Helix 17
AB8
D
58 70Right-handed alpha
Helix 18
AB9
D
115 133Right-handed alpha
Helix 19
AC1
D
136 143Right-handed alpha
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There are 10 sheets in PDB entry 8DO8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 12first strand
Strand 2
A
115 128parallel
Strand 3
A
97 106anti-parallel
Strand 4
A
190 195anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 34first strand
Strand 2
A
186 187anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 41first strand
Strand 2
A
44 47anti-parallel
Strand 3
E
837 838anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 56first strand
Strand 2
A
63 67anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 157first strand
Strand 2
B
79 88anti-parallel
Strand 3
B
93 104anti-parallel
Strand 4
B
182 189anti-parallel
Strand 5
B
169 177anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 13first strand
Strand 2
C
115 129parallel
Strand 3
C
95 106anti-parallel
Strand 4
C
190 196anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 34first strand
Strand 2
C
186 187anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 39first strand
Strand 2
C
44 47anti-parallel
Strand 3
F
837 838anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
52 56first strand
Strand 2
C
63 67anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
148 157first strand
Strand 2
D
79 88anti-parallel
Strand 3
D
93 103anti-parallel
Strand 4
D
181 189anti-parallel
Strand 5
D
169 178anti-parallel
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