Analysis of interatomic Contacts of Structural Units in PDB entry:
8DOF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DOF entry

There is 1 chain in PDB entry 8DOF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 15GLN 318
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8DOF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 38Right-handed alpha
Helix 2
AA2
A
50 59Right-handed alpha
Helix 3
AA3
A
68 73Right-handed 310
Helix 4
AA4
A
88 97Right-handed alpha
Helix 5
AA5
A
104 111Right-handed alpha
Helix 6
AA6
A
112 115Right-handed 310
Helix 7
AA7
A
125 140Right-handed alpha
Helix 8
AA8
A
177 181Right-handed 310
Helix 9
AA9
A
195 200Right-handed 310
Helix 10
AB1
A
202 215Right-handed alpha
Helix 11
AB2
A
229 236Right-handed alpha
Helix 12
AB3
A
237 239Right-handed 310
Helix 13
AB4
A
286 304Right-handed alpha
Helix 14
AB5
A
306 317Right-handed alpha
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There are 2 sheets in PDB entry 8DOF. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
41 45parallel
Strand 3
A
17 21parallel
Strand 4
A
77 80parallel
Strand 5
A
101 103parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 153first strand
Strand 2
A
145 148anti-parallel
Strand 3
A
166 171parallel
Strand 4
A
116 121parallel
Strand 5
A
185 188parallel
Strand 6
A
222 226parallel
Strand 7
A
243 247parallel
Strand 8
A
254 262parallel
Strand 9
A
265 271anti-parallel
Strand 10
A
278 282anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il