Analysis of interatomic Contacts of Structural Units in PDB entry:
8DOL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DOL entry

There are 3 chains in PDB entry 8DOL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 181	GLU 747
B	ASP 181	SER 745
C	VAL 180	ASP 500

There are176 helices in PDB entry 8DOL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	191	198	Right-handed alpha
Helix 2	AA2	A	204	208	Right-handed 310
Helix 3	AA3	A	243	248	Right-handed alpha
Helix 4	AA4	A	248	256	Right-handed alpha
Helix 5	AA5	A	268	280	Right-handed alpha
Helix 6	AA6	A	299	304	Right-handed 310
Helix 7	AA7	A	336	348	Right-handed alpha
Helix 8	AA8	A	357	379	Right-handed alpha
Helix 9	AA9	A	380	391	Right-handed alpha
Helix 10	AB1	A	399	406	Right-handed alpha
Helix 11	AB2	A	424	429	Right-handed alpha
Helix 12	AB3	A	431	435	Right-handed 310
Helix 13	AB4	A	437	442	Right-handed alpha
Helix 14	AB5	A	444	457	Right-handed alpha
Helix 15	AB6	A	462	476	Right-handed alpha
Helix 16	AB7	A	477	479	Right-handed 310
Helix 17	AB8	A	480	487	Right-handed alpha
Helix 18	AB9	A	493	497	Right-handed 310
Helix 19	AC1	A	515	530	Right-handed alpha
Helix 20	AC2	A	551	556	Right-handed 310
Helix 21	AC3	A	558	569	Right-handed alpha
Helix 22	AC4	A	581	586	Right-handed alpha
Helix 23	AC5	A	593	604	Right-handed alpha
Helix 24	AC6	A	615	617	Right-handed 310
Helix 25	AC7	A	618	630	Right-handed alpha
Helix 26	AC8	A	661	667	Right-handed alpha
Helix 27	AC9	A	692	702	Right-handed alpha
Helix 28	AD1	A	703	710	Right-handed alpha
Helix 29	AD2	A	720	731	Right-handed alpha
Helix 30	AD3	A	737	741	Right-handed 310
Helix 31	AD4	B	191	198	Right-handed alpha
Helix 32	AD5	B	204	208	Right-handed 310
Helix 33	AD6	B	243	248	Right-handed alpha
Helix 34	AD7	B	248	256	Right-handed alpha
Helix 35	AD8	B	268	280	Right-handed alpha
Helix 36	AD9	B	299	304	Right-handed 310
Helix 37	AE1	B	336	348	Right-handed alpha
Helix 38	AE2	B	359	379	Right-handed alpha
Helix 39	AE3	B	380	389	Right-handed alpha
Helix 40	AE4	B	399	406	Right-handed alpha
Helix 41	AE5	B	445	455	Right-handed alpha
Helix 42	AE6	B	463	476	Right-handed alpha
Helix 43	AE7	B	477	479	Right-handed 310
Helix 44	AE8	B	480	487	Right-handed alpha
Helix 45	AE9	B	493	497	Right-handed 310
Helix 46	AF1	B	516	530	Right-handed alpha
Helix 47	AF2	B	551	556	Right-handed 310
Helix 48	AF3	B	558	569	Right-handed alpha
Helix 49	AF4	B	581	586	Right-handed alpha
Helix 50	AF5	B	588	592	Right-handed 310
Helix 51	AF6	B	594	604	Right-handed alpha
Helix 52	AF7	B	615	617	Right-handed 310
Helix 53	AF8	B	618	630	Right-handed alpha
Helix 54	AF9	B	661	667	Right-handed alpha
Helix 55	AG1	B	692	702	Right-handed alpha
Helix 56	AG2	B	703	710	Right-handed alpha
Helix 57	AG3	B	720	731	Right-handed alpha
Helix 58	AG4	B	737	741	Right-handed 310
Helix 59	AG5	C	191	198	Right-handed alpha
Helix 60	AG6	C	204	208	Right-handed 310
Helix 61	AG7	C	243	248	Right-handed alpha
Helix 62	AG8	C	248	256	Right-handed alpha
Helix 63	AG9	C	268	280	Right-handed alpha
Helix 64	AH1	C	299	303	Right-handed 310
Helix 65	AH2	C	335	348	Right-handed alpha
Helix 66	AH3	C	356	378	Right-handed alpha
Helix 67	AH4	C	386	390	Right-handed 310
Helix 68	AH5	C	399	404	Right-handed alpha
Helix 69	AH6	C	444	448	Right-handed 310
Helix 70	AH7	C	449	454	Right-handed alpha
Helix 71	AH8	C	465	476	Right-handed alpha
Helix 72	AH9	C	477	479	Right-handed 310
Helix 73	AI1	C	480	487	Right-handed alpha
Helix 74	AI2	C	493	497	Right-handed 310
Helix 75	AI3	C	513	515	Right-handed 310
Helix 76	AI4	C	516	530	Right-handed alpha
Helix 77	AI5	C	551	556	Right-handed 310
Helix 78	AI6	C	558	565	Right-handed alpha
Helix 79	AI7	C	567	571	Right-handed 310
Helix 80	AI8	C	581	586	Right-handed alpha
Helix 81	AI9	C	594	603	Right-handed alpha
Helix 82	AJ1	C	615	617	Right-handed 310
Helix 83	AJ2	C	618	630	Right-handed alpha
Helix 84	AJ3	C	661	667	Right-handed alpha
Helix 85	AJ4	C	692	703	Right-handed alpha
Helix 86	AJ5	C	703	708	Right-handed alpha
Helix 87	AJ6	C	720	731	Right-handed alpha
Helix 88	AJ7	D	191	198	Right-handed alpha
Helix 89	AJ8	D	204	208	Right-handed 310
Helix 90	AJ9	D	243	248	Right-handed alpha
Helix 91	AK1	D	248	256	Right-handed alpha
Helix 92	AK2	D	268	280	Right-handed alpha
Helix 93	AK3	D	299	304	Right-handed 310
Helix 94	AK4	D	336	348	Right-handed alpha
Helix 95	AK5	D	357	379	Right-handed alpha
Helix 96	AK6	D	381	391	Right-handed alpha
Helix 97	AK7	D	399	406	Right-handed alpha
Helix 98	AK8	D	424	429	Right-handed alpha
Helix 99	AK9	D	437	442	Right-handed alpha
Helix 100	AL1	D	444	458	Right-handed alpha
Helix 101	AL2	D	465	475	Right-handed alpha
Helix 102	AL3	D	476	479	Right-handed 310
Helix 103	AL4	D	480	489	Right-handed alpha
Helix 104	AL5	D	493	497	Right-handed 310
Helix 105	AL6	D	515	530	Right-handed alpha
Helix 106	AL7	D	551	556	Right-handed 310
Helix 107	AL8	D	558	565	Right-handed alpha
Helix 108	AL9	D	581	586	Right-handed alpha
Helix 109	AM1	D	593	603	Right-handed alpha
Helix 110	AM2	D	615	617	Right-handed 310
Helix 111	AM3	D	618	630	Right-handed alpha
Helix 112	AM4	D	661	667	Right-handed alpha
Helix 113	AM5	D	692	701	Right-handed alpha
Helix 114	AM6	D	703	710	Right-handed alpha
Helix 115	AM7	D	720	731	Right-handed alpha
Helix 116	AM8	D	737	741	Right-handed 310
Helix 117	AM9	E	191	198	Right-handed alpha
Helix 118	AN1	E	204	208	Right-handed 310
Helix 119	AN2	E	243	248	Right-handed alpha
Helix 120	AN3	E	248	256	Right-handed alpha
Helix 121	AN4	E	268	280	Right-handed alpha
Helix 122	AN5	E	299	304	Right-handed 310
Helix 123	AN6	E	336	348	Right-handed alpha
Helix 124	AN7	E	357	379	Right-handed alpha
Helix 125	AN8	E	382	390	Right-handed alpha
Helix 126	AN9	E	399	406	Right-handed alpha
Helix 127	AO1	E	424	429	Right-handed alpha
Helix 128	AO2	E	437	443	Right-handed alpha
Helix 129	AO3	E	444	457	Right-handed alpha
Helix 130	AO4	E	463	476	Right-handed alpha
Helix 131	AO5	E	477	479	Right-handed 310
Helix 132	AO6	E	480	487	Right-handed alpha
Helix 133	AO7	E	493	497	Right-handed 310
Helix 134	AO8	E	515	531	Right-handed alpha
Helix 135	AO9	E	551	556	Right-handed 310
Helix 136	AP1	E	558	565	Right-handed alpha
Helix 137	AP2	E	566	571	Right-handed 310
Helix 138	AP3	E	581	587	Right-handed alpha
Helix 139	AP4	E	593	604	Right-handed alpha
Helix 140	AP5	E	615	617	Right-handed 310
Helix 141	AP6	E	618	630	Right-handed alpha
Helix 142	AP7	E	661	667	Right-handed alpha
Helix 143	AP8	E	692	703	Right-handed alpha
Helix 144	AP9	E	703	710	Right-handed alpha
Helix 145	AQ1	E	720	732	Right-handed alpha
Helix 146	AQ2	E	737	741	Right-handed 310
Helix 147	AQ3	F	191	198	Right-handed alpha
Helix 148	AQ4	F	204	208	Right-handed 310
Helix 149	AQ5	F	243	248	Right-handed alpha
Helix 150	AQ6	F	248	256	Right-handed alpha
Helix 151	AQ7	F	268	282	Right-handed alpha
Helix 152	AQ8	F	299	304	Right-handed 310
Helix 153	AQ9	F	336	348	Right-handed alpha
Helix 154	AR1	F	361	378	Right-handed alpha
Helix 155	AR2	F	380	391	Right-handed alpha
Helix 156	AR3	F	399	406	Right-handed alpha
Helix 157	AR4	F	407	409	Right-handed 310
Helix 158	AR5	F	437	443	Right-handed alpha
Helix 159	AR6	F	445	457	Right-handed alpha
Helix 160	AR7	F	463	476	Right-handed alpha
Helix 161	AR8	F	477	479	Right-handed 310
Helix 162	AR9	F	480	487	Right-handed alpha
Helix 163	AS1	F	493	497	Right-handed 310
Helix 164	AS2	F	515	530	Right-handed alpha
Helix 165	AS3	F	551	556	Right-handed 310
Helix 166	AS4	F	558	565	Right-handed alpha
Helix 167	AS5	F	568	571	Right-handed 310
Helix 168	AS6	F	581	586	Right-handed alpha
Helix 169	AS7	F	593	604	Right-handed alpha
Helix 170	AS8	F	615	617	Right-handed 310
Helix 171	AS9	F	618	630	Right-handed alpha
Helix 172	AT1	F	661	667	Right-handed alpha
Helix 173	AT2	F	692	702	Right-handed alpha
Helix 174	AT3	F	703	708	Right-handed alpha
Helix 175	AT4	F	720	731	Right-handed alpha
Helix 176	AT5	F	737	741	Right-handed 310

There are 15 sheets in PDB entry 8DOL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	221	first strand
Strand 2	A	224	228	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	288	first strand
Strand 2	A	502	506	parallel
Strand 3	A	259	263	parallel
Strand 4	A	545	549	parallel
Strand 5	A	573	579	parallel
Strand 6	A	234	237	parallel
Strand 7	A	607	611	parallel
Strand 8	A	671	676	anti-parallel
Strand 9	A	682	685	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	413	first strand
Strand 2	A	420	423	anti-parallel

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There are 13 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	631	642	first strand
Strand 2	A	648	658	anti-parallel
Strand 3	B	631	642	anti-parallel
Strand 4	B	648	658	anti-parallel
Strand 5	C	631	642	anti-parallel
Strand 6	C	648	658	anti-parallel
Strand 7	D	631	642	anti-parallel
Strand 8	D	648	658	anti-parallel
Strand 9	E	631	642	anti-parallel
Strand 10	E	648	658	anti-parallel
Strand 11	F	631	642	anti-parallel
Strand 12	F	648	658	anti-parallel
Strand 13	A	631	642	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	221	first strand
Strand 2	B	224	228	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	288	first strand
Strand 2	B	502	506	parallel
Strand 3	B	259	263	parallel
Strand 4	B	545	549	parallel
Strand 5	B	573	579	parallel
Strand 6	B	233	237	parallel
Strand 7	B	605	611	parallel
Strand 8	B	671	676	anti-parallel
Strand 9	B	682	685	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	215	221	first strand
Strand 2	C	224	228	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	284	288	first strand
Strand 2	C	502	506	parallel
Strand 3	C	259	263	parallel
Strand 4	C	545	549	parallel
Strand 5	C	573	579	parallel
Strand 6	C	233	237	parallel
Strand 7	C	605	611	parallel
Strand 8	C	671	676	anti-parallel
Strand 9	C	682	685	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	215	221	first strand
Strand 2	D	224	228	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	284	288	first strand
Strand 2	D	502	506	parallel
Strand 3	D	259	263	parallel
Strand 4	D	545	549	parallel
Strand 5	D	573	579	parallel
Strand 6	D	233	237	parallel
Strand 7	D	605	611	parallel
Strand 8	D	671	676	anti-parallel
Strand 9	D	682	685	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	215	221	first strand
Strand 2	E	224	228	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	284	288	first strand
Strand 2	E	502	506	parallel
Strand 3	E	259	263	parallel
Strand 4	E	545	549	parallel
Strand 5	E	573	579	parallel
Strand 6	E	234	237	parallel
Strand 7	E	607	611	parallel
Strand 8	E	671	676	anti-parallel
Strand 9	E	682	685	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	410	413	first strand
Strand 2	E	420	423	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	215	221	first strand
Strand 2	F	224	228	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	284	288	first strand
Strand 2	F	502	506	parallel
Strand 3	F	259	263	parallel
Strand 4	F	545	549	parallel
Strand 5	F	573	579	parallel
Strand 6	F	234	237	parallel
Strand 7	F	607	611	parallel
Strand 8	F	671	676	anti-parallel
Strand 9	F	682	685	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DOL

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DOL