Analysis of interatomic Contacts of Structural Units in PDB entry:
8DOP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DOP entry

There are 8 chains in PDB entry 8DOP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 1LEU 230
B
 ILE 1SER 229
C
 ILE 1LEU 230
D
 THR 2ASN 231
E
 ILE 1ASN 231
F
 ILE 1ASN 231
G
 ILE 1ASN 231
H
 ILE 1LEU 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are101 helices in PDB entry 8DOP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 23Right-handed alpha
Helix 2
AA2
A
36 53Right-handed alpha
Helix 3
AA3
A
66 81Right-handed alpha
Helix 4
AA4
A
92 103Right-handed alpha
Helix 5
AA5
A
104 110Right-handed 310
Helix 6
AA6
A
123 129Right-handed alpha
Helix 7
AA7
A
135 150Right-handed alpha
Helix 8
AA8
A
158 170Right-handed alpha
Helix 9
AA9
A
195 203Right-handed alpha
Helix 10
AB1
A
210 215Right-handed alpha
Helix 11
AB2
A
218 229Right-handed alpha
Helix 12
AB3
B
14 24Right-handed alpha
Helix 13
AB4
B
36 43Right-handed alpha
Helix 14
AB5
B
43 53Right-handed alpha
Helix 15
AB6
B
66 81Right-handed alpha
Helix 16
AB7
B
92 104Right-handed alpha
Helix 17
AB8
B
105 110Right-handed 310
Helix 18
AB9
B
123 130Right-handed alpha
Helix 19
AC1
B
135 150Right-handed alpha
Helix 20
AC2
B
161 170Right-handed alpha
Helix 21
AC3
B
195 203Right-handed alpha
Helix 22
AC4
B
210 215Right-handed alpha
Helix 23
AC5
B
218 229Right-handed alpha
Helix 24
AC6
C
14 25Right-handed alpha
Helix 25
AC7
C
36 43Right-handed alpha
Helix 26
AC8
C
43 52Right-handed alpha
Helix 27
AC9
C
66 81Right-handed alpha
Helix 28
AD1
C
92 104Right-handed alpha
Helix 29
AD2
C
105 110Right-handed 310
Helix 30
AD3
C
123 130Right-handed alpha
Helix 31
AD4
C
135 150Right-handed alpha
Helix 32
AD5
C
158 160Right-handed 310
Helix 33
AD6
C
161 170Right-handed alpha
Helix 34
AD7
C
195 203Right-handed alpha
Helix 35
AD8
C
210 215Right-handed alpha
Helix 36
AD9
C
218 229Right-handed alpha
Helix 37
AE1
D
14 25Right-handed alpha
Helix 38
AE2
D
36 43Right-handed alpha
Helix 39
AE3
D
43 53Right-handed alpha
Helix 40
AE4
D
66 80Right-handed alpha
Helix 41
AE5
D
92 104Right-handed alpha
Helix 42
AE6
D
105 110Right-handed 310
Helix 43
AE7
D
123 129Right-handed alpha
Helix 44
AE8
D
135 150Right-handed alpha
Helix 45
AE9
D
158 160Right-handed 310
Helix 46
AF1
D
161 170Right-handed alpha
Helix 47
AF2
D
195 203Right-handed alpha
Helix 48
AF3
D
210 215Right-handed alpha
Helix 49
AF4
D
218 231Right-handed alpha
Helix 50
AF5
E
14 23Right-handed alpha
Helix 51
AF6
E
36 43Right-handed alpha
Helix 52
AF7
E
43 52Right-handed alpha
Helix 53
AF8
E
66 81Right-handed alpha
Helix 54
AF9
E
92 104Right-handed alpha
Helix 55
AG1
E
105 107Right-handed 310
Helix 56
AG2
E
123 129Right-handed alpha
Helix 57
AG3
E
135 150Right-handed alpha
Helix 58
AG4
E
158 160Right-handed 310
Helix 59
AG5
E
161 170Right-handed alpha
Helix 60
AG6
E
195 203Right-handed alpha
Helix 61
AG7
E
210 215Right-handed alpha
Helix 62
AG8
E
218 229Right-handed alpha
Helix 63
AG9
F
14 25Right-handed alpha
Helix 64
AH1
F
36 43Right-handed alpha
Helix 65
AH2
F
43 53Right-handed alpha
Helix 66
AH3
F
66 81Right-handed alpha
Helix 67
AH4
F
92 104Right-handed alpha
Helix 68
AH5
F
105 110Right-handed 310
Helix 69
AH6
F
123 130Right-handed alpha
Helix 70
AH7
F
135 150Right-handed alpha
Helix 71
AH8
F
158 160Right-handed 310
Helix 72
AH9
F
161 170Right-handed alpha
Helix 73
AI1
F
195 203Right-handed alpha
Helix 74
AI2
F
210 215Right-handed alpha
Helix 75
AI3
F
218 231Right-handed alpha
Helix 76
AI4
G
14 25Right-handed alpha
Helix 77
AI5
G
36 43Right-handed alpha
Helix 78
AI6
G
43 53Right-handed alpha
Helix 79
AI7
G
66 80Right-handed alpha
Helix 80
AI8
G
92 104Right-handed alpha
Helix 81
AI9
G
105 110Right-handed 310
Helix 82
AJ1
G
123 130Right-handed alpha
Helix 83
AJ2
G
135 150Right-handed alpha
Helix 84
AJ3
G
158 160Right-handed 310
Helix 85
AJ4
G
161 170Right-handed alpha
Helix 86
AJ5
G
195 203Right-handed alpha
Helix 87
AJ6
G
210 215Right-handed alpha
Helix 88
AJ7
G
218 231Right-handed alpha
Helix 89
AJ8
H
14 25Right-handed alpha
Helix 90
AJ9
H
36 43Right-handed alpha
Helix 91
AK1
H
43 53Right-handed alpha
Helix 92
AK2
H
66 80Right-handed alpha
Helix 93
AK3
H
92 102Right-handed alpha
Helix 94
AK4
H
103 110Right-handed 310
Helix 95
AK5
H
123 129Right-handed alpha
Helix 96
AK6
H
135 150Right-handed alpha
Helix 97
AK7
H
159 161Right-handed 310
Helix 98
AK8
H
162 170Right-handed alpha
Helix 99
AK9
H
195 203Right-handed alpha
Helix 100
AL1
H
210 215Right-handed alpha
Helix 101
AL2
H
218 230Right-handed alpha
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There are 8 sheets in PDB entry 8DOP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 10first strand
Strand 2
A
31 35parallel
Strand 3
A
57 63parallel
Strand 4
A
84 88parallel
Strand 5
A
112 116parallel
Strand 6
A
154 156parallel
Strand 7
A
174 177parallel
Strand 8
A
206 209parallel
Strand 9
A
6 10parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 10first strand
Strand 2
B
31 35parallel
Strand 3
B
57 63parallel
Strand 4
B
84 88parallel
Strand 5
B
112 116parallel
Strand 6
B
154 156parallel
Strand 7
B
174 177parallel
Strand 8
B
206 209parallel
Strand 9
B
6 10parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 10first strand
Strand 2
C
31 35parallel
Strand 3
C
57 63parallel
Strand 4
C
84 88parallel
Strand 5
C
112 116parallel
Strand 6
C
154 156parallel
Strand 7
C
174 177parallel
Strand 8
C
206 209parallel
Strand 9
C
6 10parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 10first strand
Strand 2
D
31 35parallel
Strand 3
D
57 63parallel
Strand 4
D
84 88parallel
Strand 5
D
112 116parallel
Strand 6
D
154 156parallel
Strand 7
D
174 177parallel
Strand 8
D
206 209parallel
Strand 9
D
6 10parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
6 10first strand
Strand 2
E
31 35parallel
Strand 3
E
57 63parallel
Strand 4
E
84 88parallel
Strand 5
E
112 116parallel
Strand 6
E
154 156parallel
Strand 7
E
174 178parallel
Strand 8
E
206 209parallel
Strand 9
E
6 10parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
6 10first strand
Strand 2
F
31 35parallel
Strand 3
F
57 63parallel
Strand 4
F
84 88parallel
Strand 5
F
112 116parallel
Strand 6
F
154 156parallel
Strand 7
F
174 177parallel
Strand 8
F
206 209parallel
Strand 9
F
6 10parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
6 9first strand
Strand 2
G
31 35parallel
Strand 3
G
57 63parallel
Strand 4
G
84 88parallel
Strand 5
G
112 116parallel
Strand 6
G
154 156parallel
Strand 7
G
174 177parallel
Strand 8
G
206 209parallel
Strand 9
G
6 9parallel
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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
6 10first strand
Strand 2
H
31 35parallel
Strand 3
H
57 63parallel
Strand 4
H
84 88parallel
Strand 5
H
112 116parallel
Strand 6
H
154 156parallel
Strand 7
H
174 177parallel
Strand 8
H
206 209parallel
Strand 9
H
6 10parallel
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