Analysis of interatomic Contacts of Structural Units in PDB entry:
8DOQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DOQ entry

There are 2 chains in PDB entry 8DOQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 20LEU 249
B
 ILE 20LEU 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 8DOQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 44Right-handed alpha
Helix 2
AA2
A
55 62Right-handed alpha
Helix 3
AA3
A
62 72Right-handed alpha
Helix 4
AA4
A
85 100Right-handed alpha
Helix 5
AA5
A
111 123Right-handed alpha
Helix 6
AA6
A
124 129Right-handed 310
Helix 7
AA7
A
142 148Right-handed alpha
Helix 8
AA8
A
154 169Right-handed alpha
Helix 9
AA9
A
177 179Right-handed 310
Helix 10
AB1
A
180 189Right-handed alpha
Helix 11
AB2
A
214 222Right-handed alpha
Helix 12
AB3
A
229 234Right-handed alpha
Helix 13
AB4
A
237 249Right-handed alpha
Helix 14
AB5
B
33 42Right-handed alpha
Helix 15
AB6
B
55 62Right-handed alpha
Helix 16
AB7
B
62 72Right-handed alpha
Helix 17
AB8
B
85 100Right-handed alpha
Helix 18
AB9
B
111 123Right-handed alpha
Helix 19
AC1
B
124 129Right-handed 310
Helix 20
AC2
B
142 148Right-handed alpha
Helix 21
AC3
B
154 169Right-handed alpha
Helix 22
AC4
B
177 189Right-handed alpha
Helix 23
AC5
B
214 221Right-handed alpha
Helix 24
AC6
B
229 234Right-handed alpha
Helix 25
AC7
B
237 249Right-handed alpha
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There are 2 sheets in PDB entry 8DOQ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 29first strand
Strand 2
A
50 54parallel
Strand 3
A
76 82parallel
Strand 4
A
103 107parallel
Strand 5
A
131 135parallel
Strand 6
A
173 175parallel
Strand 7
A
193 196parallel
Strand 8
A
225 228parallel
Strand 9
A
25 29parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 29first strand
Strand 2
B
50 54parallel
Strand 3
B
76 82parallel
Strand 4
B
103 107parallel
Strand 5
B
131 135parallel
Strand 6
B
173 175parallel
Strand 7
B
193 196parallel
Strand 8
B
225 228parallel
Strand 9
B
25 29parallel
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