Analysis of interatomic Contacts of Structural Units in PDB entry:
8DOR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DOR entry

There are 4 chains in PDB entry 8DOR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 9ILE 225
B
 ASP 10ILE 225
C
 MET 9ILE 225
D
 ASP 10ILE 225
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 8DOR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 18Right-handed alpha
Helix 2
AA2
A
31 45Right-handed alpha
Helix 3
AA3
A
47 51Right-handed 310
Helix 4
AA4
A
61 70Right-handed alpha
Helix 5
AA5
A
71 75Right-handed 310
Helix 6
AA6
A
76 86Right-handed alpha
Helix 7
AA7
A
99 113Right-handed alpha
Helix 8
AA8
A
118 138Right-handed alpha
Helix 9
AA9
A
142 165Right-handed alpha
Helix 10
AB1
A
176 184Right-handed alpha
Helix 11
AB2
A
185 190Right-handed alpha
Helix 12
AB3
A
206 210Right-handed 310
Helix 13
AB4
A
217 221Right-handed alpha
Helix 14
AB5
B
11 18Right-handed alpha
Helix 15
AB6
B
31 45Right-handed alpha
Helix 16
AB7
B
47 51Right-handed 310
Helix 17
AB8
B
61 70Right-handed alpha
Helix 18
AB9
B
71 72Right-handed 310
Helix 19
AC1
B
73 78Right-handed 310
Helix 20
AC2
B
79 86Right-handed alpha
Helix 21
AC3
B
99 113Right-handed alpha
Helix 22
AC4
B
118 138Right-handed alpha
Helix 23
AC5
B
142 165Right-handed alpha
Helix 24
AC6
B
176 184Right-handed alpha
Helix 25
AC7
B
186 189Right-handed 310
Helix 26
AC8
B
206 210Right-handed 310
Helix 27
AC9
B
217 221Right-handed alpha
Helix 28
AD1
C
10 18Right-handed alpha
Helix 29
AD2
C
31 45Right-handed alpha
Helix 30
AD3
C
47 51Right-handed 310
Helix 31
AD4
C
61 70Right-handed alpha
Helix 32
AD5
C
71 78Right-handed 310
Helix 33
AD6
C
79 86Right-handed alpha
Helix 34
AD7
C
99 113Right-handed alpha
Helix 35
AD8
C
118 138Right-handed alpha
Helix 36
AD9
C
142 165Right-handed alpha
Helix 37
AE1
C
176 184Right-handed alpha
Helix 38
AE2
C
206 211Right-handed 310
Helix 39
AE3
C
217 221Right-handed alpha
Helix 40
AE4
D
11 18Right-handed alpha
Helix 41
AE5
D
31 45Right-handed alpha
Helix 42
AE6
D
47 51Right-handed 310
Helix 43
AE7
D
61 70Right-handed alpha
Helix 44
AE8
D
71 72Right-handed 310
Helix 45
AE9
D
73 78Right-handed 310
Helix 46
AF1
D
79 86Right-handed alpha
Helix 47
AF2
D
99 113Right-handed alpha
Helix 48
AF3
D
118 138Right-handed alpha
Helix 49
AF4
D
142 165Right-handed alpha
Helix 50
AF5
D
176 184Right-handed alpha
Helix 51
AF6
D
185 190Right-handed alpha
Helix 52
AF7
D
206 210Right-handed 310
Helix 53
AF8
D
217 221Right-handed alpha
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There are 4 sheets in PDB entry 8DOR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 169first strand
Strand 2
A
191 200anti-parallel
Strand 3
A
88 95anti-parallel
Strand 4
A
54 59anti-parallel
Strand 5
B
222 225parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 225first strand
Strand 2
B
54 59parallel
Strand 3
B
88 95anti-parallel
Strand 4
B
191 200anti-parallel
Strand 5
B
168 169anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
168 169first strand
Strand 2
C
191 200anti-parallel
Strand 3
C
88 95anti-parallel
Strand 4
C
54 59anti-parallel
Strand 5
D
222 225parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
222 225first strand
Strand 2
D
54 59parallel
Strand 3
D
88 95anti-parallel
Strand 4
D
191 200anti-parallel
Strand 5
D
168 169anti-parallel
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