Analysis of interatomic Contacts of Structural Units in PDB entry:
8DOU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DOU entry

There are 4 chains in PDB entry 8DOU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1PRO 395
B
 ASN 2ALA 256
C
 GLY 1PRO 395
D
 ASN 2ALA 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 8DOU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 27Right-handed alpha
Helix 2
AA2
A
59 69Right-handed alpha
Helix 3
AA3
A
99 112Right-handed alpha
Helix 4
AA4
A
114 130Right-handed alpha
Helix 5
AA5
A
138 142Right-handed 310
Helix 6
AA6
A
143 158Right-handed alpha
Helix 7
AA7
A
173 190Right-handed alpha
Helix 8
AA8
A
200 204Right-handed 310
Helix 9
AA9
A
224 241Right-handed alpha
Helix 10
AB1
B
3 18Right-handed alpha
Helix 11
AB2
B
22 48Right-handed alpha
Helix 12
AB3
B
49 51Right-handed 310
Helix 13
AB4
B
56 87Right-handed alpha
Helix 14
AB5
B
88 95Right-handed alpha
Helix 15
AB6
B
101 129Right-handed alpha
Helix 16
AB7
B
132 137Right-handed 310
Helix 17
AB8
B
139 163Right-handed alpha
Helix 18
AB9
B
167 180Right-handed alpha
Helix 19
AC1
B
188 192Right-handed 310
Helix 20
AC2
B
193 201Right-handed alpha
Helix 21
AC3
B
205 218Right-handed alpha
Helix 22
AC4
B
223 256Right-handed alpha
Helix 23
AC5
C
18 27Right-handed alpha
Helix 24
AC6
C
59 69Right-handed alpha
Helix 25
AC7
C
100 111Right-handed alpha
Helix 26
AC8
C
114 129Right-handed alpha
Helix 27
AC9
C
138 142Right-handed 310
Helix 28
AD1
C
143 159Right-handed alpha
Helix 29
AD2
C
175 191Right-handed alpha
Helix 30
AD3
C
201 206Right-handed alpha
Helix 31
AD4
C
224 239Right-handed alpha
Helix 32
AD5
C
315 318Right-handed 310
Helix 33
AD6
D
3 18Right-handed alpha
Helix 34
AD7
D
22 48Right-handed alpha
Helix 35
AD8
D
49 51Right-handed 310
Helix 36
AD9
D
57 84Right-handed alpha
Helix 37
AE1
D
89 95Right-handed alpha
Helix 38
AE2
D
101 129Right-handed alpha
Helix 39
AE3
D
132 139Right-handed 310
Helix 40
AE4
D
140 163Right-handed alpha
Helix 41
AE5
D
168 180Right-handed alpha
Helix 42
AE6
D
188 192Right-handed 310
Helix 43
AE7
D
193 201Right-handed alpha
Helix 44
AE8
D
205 217Right-handed alpha
Helix 45
AE9
D
223 256Right-handed alpha
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There are 8 sheets in PDB entry 8DOU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 37first strand
Strand 2
A
2 13anti-parallel
Strand 3
A
43 44anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 37first strand
Strand 2
A
2 13anti-parallel
Strand 3
A
75 80anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 166first strand
Strand 2
A
193 197parallel
Strand 3
A
49 53parallel
Strand 4
A
210 214parallel
Strand 5
A
219 223anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 265first strand
Strand 2
A
279 283anti-parallel
Strand 3
A
329 335anti-parallel
Strand 4
C
388 392anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 371first strand
Strand 2
A
341 350anti-parallel
Strand 3
A
296 302anti-parallel
Strand 4
A
308 313anti-parallel
Strand 5
C
380 381anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 394first strand
Strand 2
C
326 335anti-parallel
Strand 3
C
279 288anti-parallel
Strand 4
C
257 266anti-parallel
Strand 5
C
269 270anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
164 165first strand
Strand 2
C
194 197parallel
Strand 3
C
49 53parallel
Strand 4
C
211 213parallel
Strand 5
C
221 223anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
308 313first strand
Strand 2
C
298 302anti-parallel
Strand 3
C
341 348anti-parallel
Strand 4
C
369 371anti-parallel
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