Analysis of interatomic Contacts of Structural Units in PDB entry:
8DOZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DOZ entry

There are 4 chains in PDB entry 8DOZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 25	PRO 241
B	VAL 22	THR 232
C	VAL 26	PRO 241
D	GLN 21	HIS 64

There are 21 helices in PDB entry 8DOZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	52	56	Right-handed 310
Helix 2	AA2	A	86	89	Right-handed 310
Helix 3	AA3	A	98	100	Right-handed 310
Helix 4	AA4	A	111	115	Right-handed 310
Helix 5	AA5	A	184	186	Right-handed 310
Helix 6	AA6	A	215	217	Right-handed 310
Helix 7	AA7	A	229	232	Right-handed 310
Helix 8	AA8	B	50	54	Right-handed 310
Helix 9	AA9	B	101	105	Right-handed 310
Helix 10	AB1	B	144	150	Right-handed alpha
Helix 11	AB2	B	204	211	Right-handed alpha
Helix 12	AB3	C	52	56	Right-handed 310
Helix 13	AB4	C	86	89	Right-handed 310
Helix 14	AB5	C	98	100	Right-handed 310
Helix 15	AB6	C	111	115	Right-handed 310
Helix 16	AB7	C	184	186	Right-handed 310
Helix 17	AB8	C	229	232	Right-handed 310
Helix 18	AB9	D	50	54	Right-handed 310
Helix 19	AC1	D	101	105	Right-handed 310
Helix 20	AC2	D	144	150	Right-handed alpha
Helix 21	AC3	D	204	210	Right-handed alpha

There are 24 sheets in PDB entry 8DOZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	30	first strand
Strand 2	A	42	49	anti-parallel
Strand 3	A	102	107	anti-parallel
Strand 4	A	92	97	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	36	first strand
Strand 2	A	135	139	parallel
Strand 3	A	116	123	anti-parallel
Strand 4	A	57	64	anti-parallel
Strand 5	A	68	75	anti-parallel
Strand 6	A	82	84	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	36	first strand
Strand 2	A	135	139	parallel
Strand 3	A	116	123	anti-parallel
Strand 4	A	128	131	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	152	first strand
Strand 2	A	163	173	anti-parallel
Strand 3	A	204	213	anti-parallel
Strand 4	A	191	193	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	152	first strand
Strand 2	A	163	173	anti-parallel
Strand 3	A	204	213	anti-parallel
Strand 4	A	197	198	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	182	first strand
Strand 2	A	223	228	anti-parallel
Strand 3	A	233	238	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	26	first strand
Strand 2	B	38	44	anti-parallel
Strand 3	B	92	97	anti-parallel
Strand 4	B	84	89	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	124	128	parallel
Strand 3	B	106	113	anti-parallel
Strand 4	B	56	61	anti-parallel
Strand 5	B	65	71	anti-parallel
Strand 6	B	75	76	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	124	128	parallel
Strand 3	B	106	113	anti-parallel
Strand 4	B	118	120	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	141	first strand
Strand 2	B	153	162	anti-parallel
Strand 3	B	195	203	anti-parallel
Strand 4	B	182	184	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	141	first strand
Strand 2	B	153	162	anti-parallel
Strand 3	B	195	203	anti-parallel
Strand 4	B	188	189	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	178	first strand
Strand 2	B	168	173	anti-parallel
Strand 3	B	214	220	anti-parallel
Strand 4	B	223	229	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	42	49	anti-parallel
Strand 3	C	102	107	anti-parallel
Strand 4	C	92	97	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	36	first strand
Strand 2	C	135	139	parallel
Strand 3	C	116	124	anti-parallel
Strand 4	C	57	64	anti-parallel
Strand 5	C	68	75	anti-parallel
Strand 6	C	82	84	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	36	first strand
Strand 2	C	135	139	parallel
Strand 3	C	116	124	anti-parallel
Strand 4	C	127	131	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	152	first strand
Strand 2	C	163	173	anti-parallel
Strand 3	C	204	213	anti-parallel
Strand 4	C	191	193	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	152	first strand
Strand 2	C	163	173	anti-parallel
Strand 3	C	204	213	anti-parallel
Strand 4	C	197	198	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	182	first strand
Strand 2	C	223	228	anti-parallel
Strand 3	C	233	238	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	26	first strand
Strand 2	D	38	44	anti-parallel
Strand 3	D	92	97	anti-parallel
Strand 4	D	84	89	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	32	first strand
Strand 2	D	124	128	parallel
Strand 3	D	106	113	anti-parallel
Strand 4	D	56	61	anti-parallel
Strand 5	D	65	71	anti-parallel
Strand 6	D	75	76	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	32	first strand
Strand 2	D	124	128	parallel
Strand 3	D	106	113	anti-parallel
Strand 4	D	118	120	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	141	first strand
Strand 2	D	153	162	anti-parallel
Strand 3	D	195	203	anti-parallel
Strand 4	D	181	184	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	141	first strand
Strand 2	D	153	162	anti-parallel
Strand 3	D	195	203	anti-parallel
Strand 4	D	188	189	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	176	177	first strand
Strand 2	D	168	173	anti-parallel
Strand 3	D	214	220	anti-parallel
Strand 4	D	223	229	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DOZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DOZ