Analysis of interatomic Contacts of Structural Units in PDB entry:
8DP0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DP0 entry

There are 2 chains in PDB entry 8DP0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 40	VAL 1091
B	GLN 1	SER 125

There are 48 helices in PDB entry 8DP0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	69	82	Right-handed alpha
Helix 2	AA2	A	82	90	Right-handed alpha
Helix 3	AA3	A	114	117	Right-handed 310
Helix 4	AA4	A	118	128	Right-handed alpha
Helix 5	AA5	A	144	159	Right-handed alpha
Helix 6	AA6	A	171	180	Right-handed alpha
Helix 7	AA7	A	180	190	Right-handed alpha
Helix 8	AA8	A	192	199	Right-handed alpha
Helix 9	AA9	A	208	213	Right-handed alpha
Helix 10	AB1	A	240	251	Right-handed alpha
Helix 11	AB2	A	286	289	Right-handed 310
Helix 12	AB3	A	290	300	Right-handed alpha
Helix 13	AB4	A	312	317	Right-handed 310
Helix 14	AB5	A	328	332	Right-handed 310
Helix 15	AB6	A	335	340	Right-handed alpha
Helix 16	AB7	A	498	502	Right-handed 310
Helix 17	AB8	A	548	561	Right-handed alpha
Helix 18	AB9	A	568	578	Right-handed alpha
Helix 19	AC1	A	578	583	Right-handed alpha
Helix 20	AC2	A	584	587	Right-handed 310
Helix 21	AC3	A	588	595	Right-handed alpha
Helix 22	AC4	A	600	613	Right-handed alpha
Helix 23	AC5	A	623	631	Right-handed alpha
Helix 24	AC6	A	637	649	Right-handed alpha
Helix 25	AC7	A	652	659	Right-handed alpha
Helix 26	AC8	A	659	667	Right-handed alpha
Helix 27	AC9	A	668	670	Right-handed 310
Helix 28	AD1	A	675	688	Right-handed alpha
Helix 29	AD2	A	688	706	Right-handed alpha
Helix 30	AD3	A	709	724	Right-handed alpha
Helix 31	AD4	A	725	752	Right-handed alpha
Helix 32	AD5	A	766	776	Right-handed alpha
Helix 33	AD6	A	798	801	Right-handed 310
Helix 34	AD7	A	838	857	Right-handed alpha
Helix 35	AD8	A	888	896	Right-handed alpha
Helix 36	AD9	A	904	915	Right-handed alpha
Helix 37	AE1	A	917	943	Right-handed alpha
Helix 38	AE2	A	948	950	Right-handed 310
Helix 39	AE3	A	964	976	Right-handed alpha
Helix 40	AE4	A	988	996	Right-handed alpha
Helix 41	AE5	A	1003	1023	Right-handed alpha
Helix 42	AE6	A	1023	1039	Right-handed alpha
Helix 43	AE7	A	1048	1055	Right-handed alpha
Helix 44	AE8	A	1060	1078	Right-handed alpha
Helix 45	AE9	A	1080	1091	Right-handed alpha
Helix 46	AF1	B	28	32	Right-handed 310
Helix 47	AF2	B	86	90	Right-handed 310
Helix 48	AF3	B	103	109	Right-handed alpha

There are 10 sheets in PDB entry 8DP0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	58	first strand
Strand 2	A	41	44	anti-parallel
Strand 3	A	134	139	parallel
Strand 4	A	96	101	anti-parallel
Strand 5	A	106	108	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	235	first strand
Strand 2	A	220	226	anti-parallel
Strand 3	A	303	308	parallel
Strand 4	A	271	274	anti-parallel
Strand 5	A	280	281	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	353	first strand
Strand 2	A	527	528	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	419	first strand
Strand 2	A	360	369	anti-parallel
Strand 3	A	515	520	anti-parallel
Strand 4	A	478	483	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	398	first strand
Strand 2	A	381	388	anti-parallel
Strand 3	A	428	435	anti-parallel
Strand 4	A	460	467	anti-parallel
Strand 5	A	485	486	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	783	785	first strand
Strand 2	A	788	796	anti-parallel
Strand 3	A	811	817	anti-parallel
Strand 4	A	802	803	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	783	785	first strand
Strand 2	A	788	796	anti-parallel
Strand 3	A	811	817	anti-parallel
Strand 4	A	828	834	anti-parallel
Strand 5	A	876	880	anti-parallel
Strand 6	A	869	873	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	885	887	first strand
Strand 2	A	952	955	anti-parallel
Strand 3	A	960	962	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	18	24	anti-parallel
Strand 3	B	77	82	anti-parallel
Strand 4	B	67	72	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	120	124	parallel
Strand 3	B	91	96	anti-parallel
Strand 4	B	34	39	anti-parallel
Strand 5	B	45	51	anti-parallel
Strand 6	B	57	59	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DP0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DP0