Analysis of interatomic Contacts of Structural Units in PDB entry:
8DP6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DP6 entry

There are 2 chains in PDB entry 8DP6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 287LEU 553
B
 LYS 288LEU 553
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 8DP6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
297 314Right-handed alpha
Helix 2
AA2
A
327 337Right-handed alpha
Helix 3
AA3
A
347 354Right-handed alpha
Helix 4
AA4
A
364 377Right-handed alpha
Helix 5
AA5
A
396 403Right-handed alpha
Helix 6
AA6
A
406 413Right-handed alpha
Helix 7
AA7
A
414 416Right-handed 310
Helix 8
AA8
A
424 427Right-handed 310
Helix 9
AA9
A
431 440Right-handed alpha
Helix 10
AB1
A
450 452Right-handed 310
Helix 11
AB2
A
453 460Right-handed alpha
Helix 12
AB3
A
472 478Right-handed alpha
Helix 13
AB4
A
501 507Right-handed alpha
Helix 14
AB5
A
507 516Right-handed alpha
Helix 15
AB6
A
522 535Right-handed alpha
Helix 16
AB7
A
539 552Right-handed alpha
Helix 17
AB8
B
297 314Right-handed alpha
Helix 18
AB9
B
327 337Right-handed alpha
Helix 19
AC1
B
347 354Right-handed alpha
Helix 20
AC2
B
364 377Right-handed alpha
Helix 21
AC3
B
396 403Right-handed alpha
Helix 22
AC4
B
406 414Right-handed alpha
Helix 23
AC5
B
424 427Right-handed 310
Helix 24
AC6
B
431 440Right-handed alpha
Helix 25
AC7
B
450 452Right-handed 310
Helix 26
AC8
B
453 460Right-handed alpha
Helix 27
AC9
B
472 479Right-handed alpha
Helix 28
AD1
B
501 507Right-handed alpha
Helix 29
AD2
B
507 516Right-handed alpha
Helix 30
AD3
B
522 535Right-handed alpha
Helix 31
AD4
B
539 552Right-handed alpha
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There are 6 sheets in PDB entry 8DP6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 293first strand
Strand 2
A
318 321parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 346first strand
Strand 2
A
495 500anti-parallel
Strand 3
A
378 380anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
445 449first strand
Strand 2
A
418 422parallel
Strand 3
A
465 469parallel
Strand 4
A
390 395anti-parallel
Strand 5
A
480 482anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
290 293first strand
Strand 2
B
318 321parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
342 346first strand
Strand 2
B
495 500anti-parallel
Strand 3
B
378 380anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
445 449first strand
Strand 2
B
418 422parallel
Strand 3
B
465 469parallel
Strand 4
B
390 395anti-parallel
Strand 5
B
480 482anti-parallel
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