Analysis of interatomic Contacts of Structural Units in PDB entry:
8DPB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DPB entry

There are 4 chains in PDB entry 8DPB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 4ILE 327
B
 MET 1LEU 329
C
 SER 563GLU 714
D
 SER 563THR 710
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 8DPB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 17Right-handed alpha
Helix 2
AA2
A
19 32Right-handed alpha
Helix 3
AA3
A
34 49Right-handed alpha
Helix 4
AA4
A
50 52Right-handed 310
Helix 5
AA5
A
67 82Right-handed alpha
Helix 6
AA6
A
105 108Right-handed 310
Helix 7
AA7
A
109 114Right-handed alpha
Helix 8
AA8
A
135 146Right-handed alpha
Helix 9
AA9
A
163 168Right-handed 310
Helix 10
AB1
A
182 187Right-handed alpha
Helix 11
AB2
A
190 194Right-handed 310
Helix 12
AB3
A
206 227Right-handed alpha
Helix 13
AB4
A
247 265Right-handed alpha
Helix 14
AB5
A
266 292Right-handed alpha
Helix 15
AB6
A
299 311Right-handed alpha
Helix 16
AB7
A
315 326Right-handed alpha
Helix 17
AB8
B
7 17Right-handed alpha
Helix 18
AB9
B
19 32Right-handed alpha
Helix 19
AC1
B
34 49Right-handed alpha
Helix 20
AC2
B
67 82Right-handed alpha
Helix 21
AC3
B
105 108Right-handed 310
Helix 22
AC4
B
109 114Right-handed alpha
Helix 23
AC5
B
135 146Right-handed alpha
Helix 24
AC6
B
163 168Right-handed 310
Helix 25
AC7
B
177 182Right-handed 310
Helix 26
AC8
B
183 188Right-handed alpha
Helix 27
AC9
B
190 194Right-handed 310
Helix 28
AD1
B
206 225Right-handed alpha
Helix 29
AD2
B
247 262Right-handed alpha
Helix 30
AD3
B
277 292Right-handed alpha
Helix 31
AD4
B
295 311Right-handed alpha
Helix 32
AD5
B
315 328Right-handed alpha
Helix 33
AD6
C
564 581Right-handed alpha
Helix 34
AD7
C
597 610Right-handed alpha
Helix 35
AD8
C
622 634Right-handed alpha
Helix 36
AD9
C
645 648Right-handed 310
Helix 37
AE1
C
649 661Right-handed alpha
Helix 38
AE2
C
678 685Right-handed alpha
Helix 39
AE3
C
696 713Right-handed alpha
Helix 40
AE4
D
564 581Right-handed alpha
Helix 41
AE5
D
597 610Right-handed alpha
Helix 42
AE6
D
622 634Right-handed alpha
Helix 43
AE7
D
646 661Right-handed alpha
Helix 44
AE8
D
675 677Right-handed 310
Helix 45
AE9
D
678 686Right-handed alpha
Helix 46
AF1
D
696 710Right-handed alpha
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There are 4 sheets in PDB entry 8DPB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 124first strand
Strand 2
A
86 92parallel
Strand 3
A
150 154parallel
Strand 4
A
56 62parallel
Strand 5
A
171 176parallel
Strand 6
A
197 200parallel
Strand 7
A
237 239parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 103first strand
Strand 2
C
613 616parallel
Strand 3
C
585 590parallel
Strand 4
C
637 641parallel
Strand 5
C
667 670parallel
Strand 6
C
687 690parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 124first strand
Strand 2
B
86 92parallel
Strand 3
B
150 154parallel
Strand 4
B
56 62parallel
Strand 5
B
171 176parallel
Strand 6
B
197 200parallel
Strand 7
B
237 239parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 103first strand
Strand 2
D
613 616parallel
Strand 3
D
585 590parallel
Strand 4
D
637 641parallel
Strand 5
D
667 671parallel
Strand 6
D
689 691parallel
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