Analysis of interatomic Contacts of Structural Units in PDB entry:
8DPE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DPE entry

There is 1 chain in PDB entry 8DPE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 207PHE 643
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8DPE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
221 226Right-handed alpha
Helix 2
AA2
A
228 239Right-handed alpha
Helix 3
AA3
A
254 259Right-handed alpha
Helix 4
AA4
A
261 271Right-handed alpha
Helix 5
AA5
A
277 289Right-handed alpha
Helix 6
AA6
A
302 317Right-handed alpha
Helix 7
AA7
A
335 351Right-handed alpha
Helix 8
AA8
A
352 354Right-handed 310
Helix 9
AA9
A
365 376Right-handed alpha
Helix 10
AB1
A
383 393Right-handed alpha
Helix 11
AB2
A
408 415Right-handed alpha
Helix 12
AB3
A
417 428Right-handed alpha
Helix 13
AB4
A
442 453Right-handed alpha
Helix 14
AB5
A
463 465Right-handed 310
Helix 15
AB6
A
480 482Right-handed 310
Helix 16
AB7
A
483 497Right-handed alpha
Helix 17
AB8
A
507 521Right-handed alpha
Helix 18
AB9
A
533 546Right-handed alpha
Helix 19
AC1
A
557 559Right-handed 310
Helix 20
AC2
A
578 587Right-handed alpha
Helix 21
AC3
A
603 605Right-handed 310
Helix 22
AC4
A
606 620Right-handed alpha
Helix 23
AC5
A
625 633Right-handed alpha
Helix 24
AC6
A
635 640Right-handed alpha
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There are 2 sheets in PDB entry 8DPE. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 244first strand
Strand 2
A
457 461anti-parallel
Strand 3
A
293 296parallel
Strand 4
A
433 438parallel
Strand 5
A
403 406parallel
Strand 6
A
329 332parallel
Strand 7
A
379 382parallel
Strand 8
A
357 360parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
472 477first strand
Strand 2
A
597 602parallel
Strand 3
A
567 572parallel
Strand 4
A
500 505parallel
Strand 5
A
551 555parallel
Strand 6
A
525 528parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il