Analysis of interatomic Contacts of Structural Units in PDB entry:
8DPH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DPH entry

There are 5 chains in PDB entry 8DPH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 59LEU 383
B
 VAL 5VAL 246
C
 ASP 5ASN 340
D
 VAL 16PHE 61
E
 VAL 2LEU 235
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 8DPH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
61 80Right-handed alpha
Helix 2
AA2
A
85 106Right-handed alpha
Helix 3
AA3
A
106 117Right-handed alpha
Helix 4
AA4
A
127 158Right-handed alpha
Helix 5
AA5
A
158 166Right-handed alpha
Helix 6
AA6
A
167 185Right-handed alpha
Helix 7
AA7
A
187 194Right-handed alpha
Helix 8
AA8
A
195 200Right-handed 310
Helix 9
AA9
A
211 223Right-handed alpha
Helix 10
AB1
A
223 245Right-handed alpha
Helix 11
AB2
A
301 337Right-handed alpha
Helix 12
AB3
A
342 360Right-handed alpha
Helix 13
AB4
A
363 368Right-handed alpha
Helix 14
AB5
A
372 383Right-handed alpha
Helix 15
AB6
B
6 31Right-handed alpha
Helix 16
AB7
B
45 49Right-handed 310
Helix 17
AB8
B
95 101Right-handed 310
Helix 18
AB9
B
114 116Right-handed 310
Helix 19
AC1
B
117 130Right-handed alpha
Helix 20
AC2
B
145 156Right-handed alpha
Helix 21
AC3
B
159 163Right-handed 310
Helix 22
AC4
B
164 170Right-handed 310
Helix 23
AC5
B
185 203Right-handed alpha
Helix 24
AC6
B
222 243Right-handed alpha
Helix 25
AC7
C
6 24Right-handed alpha
Helix 26
AC8
C
29 34Right-handed alpha
Helix 27
AC9
C
35 37Right-handed 310
Helix 28
AD1
D
17 24Right-handed alpha
Helix 29
AD2
D
29 44Right-handed alpha
Helix 30
AD3
D
45 48Right-handed 310
Helix 31
AD4
E
28 32Right-handed 310
Helix 32
AD5
E
87 91Right-handed 310
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There are 12 sheets in PDB entry 8DPH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 76first strand
Strand 2
B
79 86anti-parallel
Strand 3
B
33 40parallel
Strand 4
B
105 111parallel
Strand 5
B
138 144parallel
Strand 6
B
211 215parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 51first strand
Strand 2
C
336 339anti-parallel
Strand 3
C
327 331anti-parallel
Strand 4
C
315 320anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 63first strand
Strand 2
C
69 74anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
89 94anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 105first strand
Strand 2
C
111 116anti-parallel
Strand 3
C
121 125anti-parallel
Strand 4
C
134 139anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
146 151first strand
Strand 2
C
156 161anti-parallel
Strand 3
C
166 170anti-parallel
Strand 4
C
175 180anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
187 192first strand
Strand 2
C
198 203anti-parallel
Strand 3
C
207 212anti-parallel
Strand 4
C
218 223anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
229 234first strand
Strand 2
C
240 245anti-parallel
Strand 3
C
250 254anti-parallel
Strand 4
C
259 264anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
273 278first strand
Strand 2
C
284 289anti-parallel
Strand 3
C
294 298anti-parallel
Strand 4
C
304 308anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 7first strand
Strand 2
E
17 25anti-parallel
Strand 3
E
78 84anti-parallel
Strand 4
E
68 73anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 12first strand
Strand 2
E
115 119parallel
Strand 3
E
92 99anti-parallel
Strand 4
E
33 40anti-parallel
Strand 5
E
44 51anti-parallel
Strand 6
E
58 60anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
128 129first strand
Strand 2
E
143 149anti-parallel
Strand 3
E
199 204anti-parallel
Strand 4
E
191 196anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
134 136first strand
Strand 2
E
231 234parallel
Strand 3
E
213 219anti-parallel
Strand 4
E
162 167anti-parallel
Strand 5
E
174 178anti-parallel
Strand 6
E
182 183anti-parallel
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