Analysis of interatomic Contacts of Structural Units in PDB entry:
8DPK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DPK entry

There are 2 chains in PDB entry 8DPK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 6	PHE 284
D	ALA 10	PHE 285

There are 22 helices in PDB entry 8DPK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	23	Right-handed 310
Helix 2	AA2	A	34	51	Right-handed alpha
Helix 3	AA3	A	66	74	Right-handed 310
Helix 4	AA4	A	91	93	Right-handed 310
Helix 5	AA5	A	94	108	Right-handed alpha
Helix 6	AA6	A	127	129	Right-handed 310
Helix 7	AA7	A	147	159	Right-handed alpha
Helix 8	AA8	A	180	184	Right-handed alpha
Helix 9	AA9	A	198	212	Right-handed alpha
Helix 10	AB1	A	246	255	Right-handed alpha
Helix 11	AB2	A	265	272	Right-handed alpha
Helix 12	AB3	A	275	279	Right-handed 310
Helix 13	AB4	D	19	23	Right-handed 310
Helix 14	AB5	D	34	51	Right-handed alpha
Helix 15	AB6	D	66	74	Right-handed 310
Helix 16	AB7	D	94	108	Right-handed alpha
Helix 17	AB8	D	127	129	Right-handed 310
Helix 18	AB9	D	147	159	Right-handed alpha
Helix 19	AC1	D	180	184	Right-handed alpha
Helix 20	AC2	D	198	212	Right-handed alpha
Helix 21	AC3	D	246	256	Right-handed alpha
Helix 22	AC4	D	265	272	Right-handed alpha

There are 10 sheets in PDB entry 8DPK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	61	first strand
Strand 2	A	11	16	parallel
Strand 3	A	280	283	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	79	first strand
Strand 2	A	82	85	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	134	first strand
Strand 2	A	137	142	anti-parallel
Strand 3	A	168	173	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	188	first strand
Strand 2	A	192	196	anti-parallel
Strand 3	A	218	222	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	229	first strand
Strand 2	A	239	243	anti-parallel
Strand 3	A	259	263	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	61	first strand
Strand 2	D	11	16	parallel
Strand 3	D	280	283	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	79	first strand
Strand 2	D	82	85	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	134	first strand
Strand 2	D	137	142	anti-parallel
Strand 3	D	168	173	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	188	first strand
Strand 2	D	192	196	anti-parallel
Strand 3	D	218	222	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	228	229	first strand
Strand 2	D	239	243	anti-parallel
Strand 3	D	259	263	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DPK

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DPK