Analysis of interatomic Contacts of Structural Units in PDB entry:
8DPL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DPL entry

There are 9 chains in PDB entry 8DPL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
F
 VAL 2SER 120
G
 SER 2LEU 112
H
 GLN 1LEU 243
A
 VAL 2SER 120
B
 SER 2LEU 112
C
 GLN 1LEU 243
K
 VAL 2SER 120
L
 SER 2LEU 112
O
 GLN 1SER 203
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8DPL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
F
89 93Right-handed 310
Helix 2
AA2
H
28 32Right-handed 310
Helix 3
AA3
H
87 91Right-handed 310
Helix 4
AA4
A
89 93Right-handed 310
Helix 5
AA5
C
28 32Right-handed 310
Helix 6
AA6
C
87 91Right-handed 310
Helix 7
AA7
K
89 93Right-handed 310
Helix 8
AA8
O
28 32Right-handed 310
Helix 9
AA9
O
87 91Right-handed 310
Helix 10
AB1
I
71 74Right-handed 310
Helix 11
AB2
I
78 84Right-handed alpha
Helix 12
AB3
J
538 541Right-handed 310
Helix 13
AB4
J
551 576Right-handed alpha
Helix 14
AB5
J
583 597Right-handed alpha
Helix 15
AB6
D
71 74Right-handed 310
Helix 16
AB7
D
78 84Right-handed alpha
Helix 17
AB8
E
538 541Right-handed 310
Helix 18
AB9
E
551 576Right-handed alpha
Helix 19
AC1
E
583 597Right-handed alpha
Helix 20
AC2
M
71 74Right-handed 310
Helix 21
AC3
M
78 84Right-handed alpha
Helix 22
AC4
N
538 541Right-handed 310
Helix 23
AC5
N
551 576Right-handed alpha
Helix 24
AC6
N
583 597Right-handed alpha
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There are 48 sheets in PDB entry 8DPL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
3 7first strand
Strand 2
F
18 25anti-parallel
Strand 3
F
80 85anti-parallel
Strand 4
F
70 75anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
11 12first strand
Strand 2
F
114 118parallel
Strand 3
F
94 103anti-parallel
Strand 4
F
34 39anti-parallel
Strand 5
F
45 51anti-parallel
Strand 6
F
60 62anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
11 12first strand
Strand 2
F
114 118parallel
Strand 3
F
94 103anti-parallel
Strand 4
F
107 110anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
9 12first strand
Strand 2
G
107 111parallel
Strand 3
G
87 93anti-parallel
Strand 4
G
36 40anti-parallel
Strand 5
G
47 50anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
9 12first strand
Strand 2
G
107 111parallel
Strand 3
G
87 93anti-parallel
Strand 4
G
101 103anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
18 23first strand
Strand 2
G
72 77anti-parallel
Strand 3
G
64 69anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 6first strand
Strand 2
H
17 25anti-parallel
Strand 3
H
78 84anti-parallel
Strand 4
H
68 73anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
58 60first strand
Strand 2
H
45 51anti-parallel
Strand 3
H
34 39anti-parallel
Strand 4
H
93 99anti-parallel
Strand 5
H
105 108anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
58 60first strand
Strand 2
H
45 51anti-parallel
Strand 3
H
34 39anti-parallel
Strand 4
H
93 99anti-parallel
Strand 5
H
112 113anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
142 144first strand
Strand 2
H
157 167anti-parallel
Strand 3
H
200 213anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
191 192first strand
Strand 2
H
183 187anti-parallel
Strand 3
H
171 176anti-parallel
Strand 4
H
223 228anti-parallel
Strand 5
H
241 242anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
18 25anti-parallel
Strand 3
A
80 85anti-parallel
Strand 4
A
70 75anti-parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
114 118parallel
Strand 3
A
94 103anti-parallel
Strand 4
A
34 39anti-parallel
Strand 5
A
45 51anti-parallel
Strand 6
A
60 62anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
114 118parallel
Strand 3
A
94 103anti-parallel
Strand 4
A
107 110anti-parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 12first strand
Strand 2
B
107 111parallel
Strand 3
B
87 93anti-parallel
Strand 4
B
36 40anti-parallel
Strand 5
B
47 50anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 12first strand
Strand 2
B
107 111parallel
Strand 3
B
87 93anti-parallel
Strand 4
B
101 103anti-parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 23first strand
Strand 2
B
72 77anti-parallel
Strand 3
B
64 69anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 6first strand
Strand 2
C
17 25anti-parallel
Strand 3
C
78 84anti-parallel
Strand 4
C
68 73anti-parallel
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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 60first strand
Strand 2
C
45 51anti-parallel
Strand 3
C
34 39anti-parallel
Strand 4
C
93 99anti-parallel
Strand 5
C
105 108anti-parallel
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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 60first strand
Strand 2
C
45 51anti-parallel
Strand 3
C
34 39anti-parallel
Strand 4
C
93 99anti-parallel
Strand 5
C
112 113anti-parallel
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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
142 144first strand
Strand 2
C
157 167anti-parallel
Strand 3
C
200 213anti-parallel
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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
191 192first strand
Strand 2
C
183 187anti-parallel
Strand 3
C
171 176anti-parallel
Strand 4
C
223 228anti-parallel
Strand 5
C
241 242anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
3 7first strand
Strand 2
K
18 25anti-parallel
Strand 3
K
80 85anti-parallel
Strand 4
K
70 75anti-parallel
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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
11 12first strand
Strand 2
K
114 118parallel
Strand 3
K
94 103anti-parallel
Strand 4
K
34 39anti-parallel
Strand 5
K
45 51anti-parallel
Strand 6
K
60 62anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
11 12first strand
Strand 2
K
114 118parallel
Strand 3
K
94 103anti-parallel
Strand 4
K
107 110anti-parallel
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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 12first strand
Strand 2
L
107 111parallel
Strand 3
L
87 93anti-parallel
Strand 4
L
36 40anti-parallel
Strand 5
L
47 50anti-parallel
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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 12first strand
Strand 2
L
107 111parallel
Strand 3
L
87 93anti-parallel
Strand 4
L
101 103anti-parallel
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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
18 23first strand
Strand 2
L
72 77anti-parallel
Strand 3
L
64 69anti-parallel
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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
3 6first strand
Strand 2
O
17 25anti-parallel
Strand 3
O
78 84anti-parallel
Strand 4
O
68 73anti-parallel
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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
58 60first strand
Strand 2
O
45 51anti-parallel
Strand 3
O
34 39anti-parallel
Strand 4
O
93 99anti-parallel
Strand 5
O
105 108anti-parallel
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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
58 60first strand
Strand 2
O
45 51anti-parallel
Strand 3
O
34 39anti-parallel
Strand 4
O
93 99anti-parallel
Strand 5
O
112 113anti-parallel
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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
142 144first strand
Strand 2
O
157 167anti-parallel
Strand 3
O
200 213anti-parallel
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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
191 192first strand
Strand 2
O
183 187anti-parallel
Strand 3
O
171 176anti-parallel
Strand 4
O
223 228anti-parallel
Strand 5
O
241 242anti-parallel
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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
42 45first strand
Strand 2
I
36 39anti-parallel
Strand 3
I
177 185parallel
Strand 4
I
63 69anti-parallel
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There are 7 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
42 45first strand
Strand 2
I
36 39anti-parallel
Strand 3
I
177 185parallel
Strand 4
I
159 161anti-parallel
Strand 5
I
165 167anti-parallel
Strand 6
I
96 98anti-parallel
Strand 7
J
580 581parallel
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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
86 89first strand
Strand 2
I
151 154anti-parallel
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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
102 103first strand
Strand 2
J
515 520anti-parallel
Strand 3
J
543 548anti-parallel
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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
108 114first strand
Strand 2
I
137 144parallel
Strand 3
I
216 223parallel
Strand 4
I
231 232anti-parallel
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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
42 45first strand
Strand 2
D
36 39anti-parallel
Strand 3
D
177 185parallel
Strand 4
D
63 69anti-parallel
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There are 7 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
42 45first strand
Strand 2
D
36 39anti-parallel
Strand 3
D
177 185parallel
Strand 4
D
159 161anti-parallel
Strand 5
D
165 167anti-parallel
Strand 6
D
96 98anti-parallel
Strand 7
E
580 581parallel
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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
86 89first strand
Strand 2
D
151 154anti-parallel
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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
102 103first strand
Strand 2
E
515 520anti-parallel
Strand 3
E
543 548anti-parallel
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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
108 114first strand
Strand 2
D
137 144parallel
Strand 3
D
216 223parallel
Strand 4
D
231 232anti-parallel
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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
42 45first strand
Strand 2
M
36 39anti-parallel
Strand 3
M
177 185parallel
Strand 4
M
63 69anti-parallel
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There are 7 strands in AE9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
42 45first strand
Strand 2
M
36 39anti-parallel
Strand 3
M
177 185parallel
Strand 4
M
159 161anti-parallel
Strand 5
M
165 167anti-parallel
Strand 6
M
96 98anti-parallel
Strand 7
N
580 581parallel
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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
86 89first strand
Strand 2
M
151 154anti-parallel
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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
102 103first strand
Strand 2
N
515 520anti-parallel
Strand 3
N
543 548anti-parallel
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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
108 114first strand
Strand 2
M
137 144parallel
Strand 3
M
216 223parallel
Strand 4
M
231 232anti-parallel
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