Analysis of interatomic Contacts of Structural Units in PDB entry:
8DPM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DPM entry

There are 11 chains in PDB entry 8DPM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
F
 ILE 33LEU 233
G
 ALA 503GLY 598
H
 GLN 1LEU 243
I
 VAL 2VAL 120
J
 VAL 3LEU 112
A
 ILE 33LEU 233
B
 ALA 503GLY 598
C
 GLN 1LEU 243
D
 VAL 2VAL 120
E
 VAL 3LEU 112
K
 ILE 33TYR 214
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8DPM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
F
78 83Right-handed alpha
Helix 2
AA2
G
552 576Right-handed alpha
Helix 3
AA3
G
583 597Right-handed alpha
Helix 4
AA4
I
28 32Right-handed 310
Helix 5
AA5
J
81 85Right-handed 310
Helix 6
AA6
A
78 83Right-handed alpha
Helix 7
AA7
B
552 576Right-handed alpha
Helix 8
AA8
B
583 597Right-handed alpha
Helix 9
AA9
D
28 32Right-handed 310
Helix 10
AB1
E
81 85Right-handed 310
Helix 11
AB2
K
78 83Right-handed alpha
Helix 12
AB3
L
552 576Right-handed alpha
Helix 13
AB4
L
583 597Right-handed alpha
Helix 14
AB5
N
28 32Right-handed 310
Helix 15
AB6
O
81 85Right-handed 310
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There are 45 sheets in PDB entry 8DPM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
42 45first strand
Strand 2
F
36 39anti-parallel
Strand 3
F
177 185parallel
Strand 4
F
63 69anti-parallel
Strand 5
F
101 103parallel
Strand 6
G
516 519anti-parallel
Strand 7
G
544 547anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
42 45first strand
Strand 2
F
36 39anti-parallel
Strand 3
F
177 185parallel
Strand 4
F
159 161anti-parallel
Strand 5
F
165 167anti-parallel
Strand 6
F
96 98anti-parallel
Strand 7
G
580 581parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
86 89first strand
Strand 2
F
151 154anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
108 114first strand
Strand 2
F
137 144parallel
Strand 3
F
216 223parallel
Strand 4
F
231 232anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 5first strand
Strand 2
H
19 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
58 60first strand
Strand 2
H
44 51anti-parallel
Strand 3
H
34 40anti-parallel
Strand 4
H
93 99anti-parallel
Strand 5
H
105 107anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
58 60first strand
Strand 2
H
44 51anti-parallel
Strand 3
H
34 40anti-parallel
Strand 4
H
93 99anti-parallel
Strand 5
H
112 113anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
142 144first strand
Strand 2
H
157 163anti-parallel
Strand 3
H
208 213anti-parallel
Strand 4
H
200 205anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
183 186first strand
Strand 2
H
171 176anti-parallel
Strand 3
H
223 228anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
3 8first strand
Strand 2
I
18 25anti-parallel
Strand 3
I
80 85anti-parallel
Strand 4
I
70 75anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
60 62first strand
Strand 2
I
45 51anti-parallel
Strand 3
I
34 39anti-parallel
Strand 4
I
94 100anti-parallel
Strand 5
I
116 118anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
102 104first strand
Strand 2
I
107 109anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
9 12first strand
Strand 2
J
107 111parallel
Strand 3
J
87 93anti-parallel
Strand 4
J
36 40anti-parallel
Strand 5
J
47 50anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
9 12first strand
Strand 2
J
107 111parallel
Strand 3
J
87 93anti-parallel
Strand 4
J
101 103anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
18 23first strand
Strand 2
J
72 77anti-parallel
Strand 3
J
64 69anti-parallel
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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
36 39anti-parallel
Strand 3
A
177 185parallel
Strand 4
A
63 69anti-parallel
Strand 5
A
101 103parallel
Strand 6
B
516 519anti-parallel
Strand 7
B
544 547anti-parallel
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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
36 39anti-parallel
Strand 3
A
177 185parallel
Strand 4
A
159 161anti-parallel
Strand 5
A
165 167anti-parallel
Strand 6
A
96 98anti-parallel
Strand 7
B
580 581parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 89first strand
Strand 2
A
151 154anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 114first strand
Strand 2
A
137 144parallel
Strand 3
A
216 223parallel
Strand 4
A
231 232anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 5first strand
Strand 2
C
19 25anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
68 73anti-parallel
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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 60first strand
Strand 2
C
44 51anti-parallel
Strand 3
C
34 40anti-parallel
Strand 4
C
93 99anti-parallel
Strand 5
C
105 107anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
142 144first strand
Strand 2
C
157 163anti-parallel
Strand 3
C
208 213anti-parallel
Strand 4
C
200 205anti-parallel
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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
183 186first strand
Strand 2
C
171 176anti-parallel
Strand 3
C
223 228anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 8first strand
Strand 2
D
18 25anti-parallel
Strand 3
D
80 85anti-parallel
Strand 4
D
70 75anti-parallel
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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
60 62first strand
Strand 2
D
45 51anti-parallel
Strand 3
D
34 39anti-parallel
Strand 4
D
94 100anti-parallel
Strand 5
D
116 118anti-parallel
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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
102 104first strand
Strand 2
D
107 109anti-parallel
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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
9 12first strand
Strand 2
E
107 111parallel
Strand 3
E
87 93anti-parallel
Strand 4
E
36 40anti-parallel
Strand 5
E
47 50anti-parallel
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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
9 12first strand
Strand 2
E
107 111parallel
Strand 3
E
87 93anti-parallel
Strand 4
E
101 103anti-parallel
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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
18 23first strand
Strand 2
E
72 77anti-parallel
Strand 3
E
64 69anti-parallel
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There are 7 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
42 45first strand
Strand 2
K
36 39anti-parallel
Strand 3
K
177 185parallel
Strand 4
K
63 69anti-parallel
Strand 5
K
101 103parallel
Strand 6
L
516 519anti-parallel
Strand 7
L
544 547anti-parallel
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There are 7 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
42 45first strand
Strand 2
K
36 39anti-parallel
Strand 3
K
177 185parallel
Strand 4
K
159 161anti-parallel
Strand 5
K
165 167anti-parallel
Strand 6
K
96 98anti-parallel
Strand 7
L
580 581parallel
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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
86 89first strand
Strand 2
K
151 154anti-parallel
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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
108 109first strand
Strand 2
K
137 144parallel
Strand 3
K
112 114parallel
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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
108 109first strand
Strand 2
K
137 144parallel
Strand 3
K
216 223parallel
Strand 4
K
231 232anti-parallel
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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
3 5first strand
Strand 2
M
19 25anti-parallel
Strand 3
M
78 83anti-parallel
Strand 4
M
68 73anti-parallel
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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
58 60first strand
Strand 2
M
44 51anti-parallel
Strand 3
M
34 40anti-parallel
Strand 4
M
93 99anti-parallel
Strand 5
M
105 107anti-parallel
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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
58 60first strand
Strand 2
M
44 51anti-parallel
Strand 3
M
34 40anti-parallel
Strand 4
M
93 99anti-parallel
Strand 5
M
112 113anti-parallel
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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
142 144first strand
Strand 2
M
157 163anti-parallel
Strand 3
M
208 213anti-parallel
Strand 4
M
200 205anti-parallel
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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
183 186first strand
Strand 2
M
171 176anti-parallel
Strand 3
M
223 228anti-parallel
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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
3 8first strand
Strand 2
N
18 25anti-parallel
Strand 3
N
80 85anti-parallel
Strand 4
N
70 75anti-parallel
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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
60 62first strand
Strand 2
N
45 51anti-parallel
Strand 3
N
34 39anti-parallel
Strand 4
N
94 100anti-parallel
Strand 5
N
116 118anti-parallel
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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
102 104first strand
Strand 2
N
107 109anti-parallel
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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
9 12first strand
Strand 2
O
107 111parallel
Strand 3
O
87 93anti-parallel
Strand 4
O
36 40anti-parallel
Strand 5
O
47 50anti-parallel
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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
9 12first strand
Strand 2
O
107 111parallel
Strand 3
O
87 93anti-parallel
Strand 4
O
101 103anti-parallel
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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
18 23first strand
Strand 2
O
72 77anti-parallel
Strand 3
O
64 69anti-parallel
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