Analysis of interatomic Contacts of Structural Units in PDB entry:
8DPT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DPT entry

There are 6 chains in PDB entry 8DPT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 2	PHE 399
B	PRO 14	LEU 178
C	PRO 3	GLY 296
D	LEU 2	PHE 399
E	PRO 14	LEU 178
F	PRO 3	GLY 296

There are 28 helices in PDB entry 8DPT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	37	Right-handed alpha
Helix 2	AA2	A	39	41	Right-handed 310
Helix 3	AA3	A	53	55	Right-handed 310
Helix 4	AA4	A	193	196	Right-handed 310
Helix 5	AA5	A	225	230	Right-handed 310
Helix 6	AA6	A	251	256	Right-handed 310
Helix 7	AA7	A	333	338	Right-handed alpha
Helix 8	AA8	B	15	43	Right-handed alpha
Helix 9	AA9	B	68	94	Right-handed alpha
Helix 10	AB1	B	95	102	Right-handed 310
Helix 11	AB2	B	103	126	Right-handed alpha
Helix 12	AB3	B	145	176	Right-handed alpha
Helix 13	AB4	C	63	67	Right-handed 310
Helix 14	AB5	C	190	194	Right-handed alpha
Helix 15	AB6	D	29	37	Right-handed alpha
Helix 16	AB7	D	39	41	Right-handed 310
Helix 17	AB8	D	53	55	Right-handed 310
Helix 18	AB9	D	193	196	Right-handed 310
Helix 19	AC1	D	225	230	Right-handed 310
Helix 20	AC2	D	251	256	Right-handed 310
Helix 21	AC3	D	333	338	Right-handed alpha
Helix 22	AC4	E	15	43	Right-handed alpha
Helix 23	AC5	E	68	94	Right-handed alpha
Helix 24	AC6	E	95	102	Right-handed 310
Helix 25	AC7	E	103	126	Right-handed alpha
Helix 26	AC8	E	145	176	Right-handed alpha
Helix 27	AC9	F	63	67	Right-handed 310
Helix 28	AD1	F	190	194	Right-handed alpha

There are 34 sheets in PDB entry 8DPT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	10	first strand
Strand 2	A	22	27	anti-parallel
Strand 3	A	64	69	anti-parallel
Strand 4	A	57	61	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	17	first strand
Strand 2	A	99	101	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	51	first strand
Strand 2	A	43	47	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	91	97	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	161	first strand
Strand 2	A	121	125	anti-parallel
Strand 3	A	108	115	anti-parallel
Strand 4	A	198	199	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	146	first strand
Strand 2	A	135	142	anti-parallel
Strand 3	A	172	180	anti-parallel
Strand 4	A	183	186	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	151	first strand
Strand 2	A	135	142	anti-parallel
Strand 3	A	172	180	anti-parallel
Strand 4	A	190	192	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	209	first strand
Strand 2	A	218	223	anti-parallel
Strand 3	A	261	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	249	first strand
Strand 2	A	233	241	anti-parallel
Strand 3	A	272	281	anti-parallel
Strand 4	A	295	298	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	316	first strand
Strand 2	A	323	329	anti-parallel
Strand 3	A	364	369	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	360	first strand
Strand 2	A	343	350	anti-parallel
Strand 3	A	374	381	anti-parallel
Strand 4	A	390	393	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	16	first strand
Strand 2	C	79	87	parallel
Strand 3	C	68	74	anti-parallel
Strand 4	C	35	39	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	25	first strand
Strand 2	C	56	59	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	99	first strand
Strand 2	C	107	111	anti-parallel
Strand 3	C	157	159	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	121	128	first strand
Strand 2	C	168	177	anti-parallel
Strand 3	C	180	181	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	121	128	first strand
Strand 2	C	168	177	anti-parallel
Strand 3	C	184	189	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	206	first strand
Strand 2	C	214	219	anti-parallel
Strand 3	C	255	258	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	249	first strand
Strand 2	C	232	240	anti-parallel
Strand 3	C	267	275	anti-parallel
Strand 4	C	289	291	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	10	first strand
Strand 2	D	22	27	anti-parallel
Strand 3	D	64	69	anti-parallel
Strand 4	D	57	61	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	17	first strand
Strand 2	D	99	101	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	51	first strand
Strand 2	D	43	47	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	91	97	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	161	first strand
Strand 2	D	121	125	anti-parallel
Strand 3	D	108	115	anti-parallel
Strand 4	D	198	199	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	146	first strand
Strand 2	D	135	142	anti-parallel
Strand 3	D	172	180	anti-parallel
Strand 4	D	183	186	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	151	first strand
Strand 2	D	135	142	anti-parallel
Strand 3	D	172	180	anti-parallel
Strand 4	D	190	192	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	204	209	first strand
Strand 2	D	218	223	anti-parallel
Strand 3	D	261	264	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	249	first strand
Strand 2	D	233	241	anti-parallel
Strand 3	D	272	281	anti-parallel
Strand 4	D	295	298	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	310	316	first strand
Strand 2	D	323	329	anti-parallel
Strand 3	D	364	369	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	356	360	first strand
Strand 2	D	343	350	anti-parallel
Strand 3	D	374	381	anti-parallel
Strand 4	D	390	393	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	14	16	first strand
Strand 2	F	79	87	parallel
Strand 3	F	68	74	anti-parallel
Strand 4	F	35	39	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	22	25	first strand
Strand 2	F	56	59	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	95	99	first strand
Strand 2	F	107	111	anti-parallel
Strand 3	F	157	159	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	121	128	first strand
Strand 2	F	168	177	anti-parallel
Strand 3	F	180	181	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	121	128	first strand
Strand 2	F	168	177	anti-parallel
Strand 3	F	184	189	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	200	206	first strand
Strand 2	F	214	219	anti-parallel
Strand 3	F	255	258	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	247	249	first strand
Strand 2	F	232	240	anti-parallel
Strand 3	F	267	275	anti-parallel
Strand 4	F	289	291	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DPT

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DPT