Analysis of interatomic Contacts of Structural Units in PDB entry:
8DPZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DPZ entry

There are 3 chains in PDB entry 8DPZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	THR 333	SER 530
F	GLN 1	SER 113
G	GLU 1	LYS 107

There are 8 helices in PDB entry 8DPZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	337	343	Right-handed alpha
Helix 2	AA2	B	364	370	Right-handed alpha
Helix 3	AA3	B	385	390	Right-handed 310
Helix 4	AA4	B	406	410	Right-handed 310
Helix 5	AA5	B	416	422	Right-handed alpha
Helix 6	AA6	B	438	443	Right-handed alpha
Helix 7	AA7	B	502	505	Right-handed 310
Helix 8	AA8	F	83	87	Right-handed 310

There are 6 sheets in PDB entry 8DPZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	395	403	anti-parallel
Strand 3	B	507	513	anti-parallel
Strand 4	B	432	437	anti-parallel
Strand 5	B	376	379	anti-parallel
Strand 6	F	100	103	anti-parallel
Strand 7	F	88	99	anti-parallel
Strand 8	F	107	111	anti-parallel
Strand 9	F	11	12	parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	395	403	anti-parallel
Strand 3	B	507	513	anti-parallel
Strand 4	B	432	437	anti-parallel
Strand 5	B	376	379	anti-parallel
Strand 6	F	100	103	anti-parallel
Strand 7	F	88	99	anti-parallel
Strand 8	F	33	39	anti-parallel
Strand 9	F	46	52	anti-parallel
Strand 10	F	57	59	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	454	first strand
Strand 2	B	492	494	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	17	25	anti-parallel
Strand 3	F	77	82	anti-parallel
Strand 4	F	67	72	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	5	first strand
Strand 2	G	19	25	anti-parallel
Strand 3	G	70	75	anti-parallel
Strand 4	G	62	67	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	13	first strand
Strand 2	G	102	106	parallel
Strand 3	G	85	90	anti-parallel
Strand 4	G	33	38	anti-parallel
Strand 5	G	45	49	anti-parallel
Strand 6	G	53	54	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DPZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DPZ