Analysis of interatomic Contacts of Structural Units in PDB entry:
8DQ1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DQ1 entry

There are 3 chains in PDB entry 8DQ1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 MET 1ILE 241
D
 ASP 4ILE 241
A
 MET 1HIS 157
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 8DQ1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
5 19Right-handed alpha
Helix 2
AA2
C
23 35Right-handed alpha
Helix 3
AA3
C
65 76Right-handed alpha
Helix 4
AA4
C
76 81Right-handed alpha
Helix 5
AA5
C
81 90Right-handed alpha
Helix 6
AA6
C
104 114Right-handed alpha
Helix 7
AA7
C
144 169Right-handed alpha
Helix 8
AA8
C
182 194Right-handed alpha
Helix 9
AA9
C
197 206Right-handed alpha
Helix 10
AB1
C
208 224Right-handed alpha
Helix 11
AB2
C
227 238Right-handed alpha
Helix 12
AB3
D
7 19Right-handed alpha
Helix 13
AB4
D
23 39Right-handed alpha
Helix 14
AB5
D
65 76Right-handed alpha
Helix 15
AB6
D
81 90Right-handed alpha
Helix 16
AB7
D
99 103Right-handed 310
Helix 17
AB8
D
104 114Right-handed alpha
Helix 18
AB9
D
144 169Right-handed alpha
Helix 19
AC1
D
182 194Right-handed alpha
Helix 20
AC2
D
197 206Right-handed alpha
Helix 21
AC3
D
208 224Right-handed alpha
Helix 22
AC4
D
227 239Right-handed alpha
Helix 23
AC5
A
44 56Right-handed alpha
Helix 24
AC6
A
58 60Right-handed 310
Helix 25
AC7
A
71 76Right-handed alpha
Helix 26
AC8
A
77 82Right-handed alpha
Helix 27
AC9
A
94 102Right-handed alpha
Helix 28
AD1
A
102 116Right-handed alpha
Helix 29
AD2
A
128 132Right-handed 310
Helix 30
AD3
A
198 211Right-handed alpha
Helix 31
AD4
A
227 232Right-handed alpha
Helix 32
AD5
A
232 255Right-handed alpha
Helix 33
AD6
A
257 270Right-handed alpha
Helix 34
AD7
A
278 296Right-handed alpha
Helix 35
AD8
B
41 43Right-handed 310
Helix 36
AD9
B
44 56Right-handed alpha
Helix 37
AE1
B
58 60Right-handed 310
Helix 38
AE2
B
71 75Right-handed 310
Helix 39
AE3
B
77 82Right-handed alpha
Helix 40
AE4
B
93 102Right-handed alpha
Helix 41
AE5
B
106 116Right-handed alpha
Helix 42
AE6
B
197 210Right-handed alpha
Helix 43
AE7
B
227 232Right-handed alpha
Helix 44
AE8
B
232 255Right-handed alpha
Helix 45
AE9
B
257 274Right-handed alpha
Helix 46
AF1
B
278 297Right-handed alpha
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There are 7 sheets in PDB entry 8DQ1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 62first strand
Strand 2
C
42 48anti-parallel
Strand 3
C
131 138anti-parallel
Strand 4
C
118 125anti-parallel
Strand 5
C
94 95anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
58 62first strand
Strand 2
D
42 48anti-parallel
Strand 3
D
132 138anti-parallel
Strand 4
D
118 124anti-parallel
Strand 5
D
94 95anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 11first strand
Strand 2
A
14 17anti-parallel
Strand 3
A
24 27anti-parallel
Strand 4
A
34 37anti-parallel
Strand 5
A
62 66parallel
Strand 6
A
89 93parallel
Strand 7
A
134 137parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 146first strand
Strand 2
A
149 155anti-parallel
Strand 3
A
164 168anti-parallel
Strand 4
A
173 177anti-parallel
Strand 5
A
216 219parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 4first strand
Strand 2
B
224 226anti-parallel
Strand 3
B
216 219anti-parallel
Strand 4
B
174 177parallel
Strand 5
B
165 168anti-parallel
Strand 6
B
151 154anti-parallel
Strand 7
B
142 143anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 11first strand
Strand 2
B
14 17anti-parallel
Strand 3
B
24 27anti-parallel
Strand 4
B
34 37anti-parallel
Strand 5
B
62 66parallel
Strand 6
B
89 91parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 184first strand
Strand 2
B
189 190anti-parallel
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