Analysis of interatomic Contacts of Structural Units in PDB entry:
8DQB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DQB entry

There is 1 chain in PDB entry 8DQB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 3ALA 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8DQB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 24Right-handed alpha
Helix 2
AA2
A
58 68Right-handed alpha
Helix 3
AA3
A
69 72Right-handed 310
Helix 4
AA4
A
91 100Right-handed alpha
Helix 5
AA5
A
117 126Right-handed alpha
Helix 6
AA6
A
135 143Right-handed alpha
Helix 7
AA7
A
143 153Right-handed alpha
Helix 8
AA8
A
181 195Right-handed alpha
Helix 9
AA9
A
202 209Right-handed alpha
Helix 10
AB1
A
215 219Right-handed 310
Helix 11
AB2
A
220 227Right-handed alpha
Helix 12
AB3
A
228 232Right-handed 310
Helix 13
AB4
A
250 255Right-handed 310
Helix 14
AB5
A
288 299Right-handed alpha
Helix 15
AB6
A
309 319Right-handed alpha
Helix 16
AB7
A
349 353Right-handed 310
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There are 3 sheets in PDB entry 8DQB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 50first strand
Strand 2
A
36 41anti-parallel
Strand 3
A
75 78anti-parallel
Strand 4
A
103 106parallel
Strand 5
A
129 132parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 279first strand
Strand 2
A
259 263parallel
Strand 3
A
236 241parallel
Strand 4
A
197 201parallel
Strand 5
A
303 306parallel
Strand 6
A
156 164parallel
Strand 7
A
324 330parallel
Strand 8
A
367 373anti-parallel
Strand 9
A
357 364anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 283first strand
Strand 2
A
286 287anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il