Analysis of interatomic Contacts of Structural Units in PDB entry:
8DQC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DQC entry

There are 2 chains in PDB entry 8DQC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 7ALA 375
B
 HIS 8ALA 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 8DQC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 23Right-handed alpha
Helix 2
AA2
A
24 26Right-handed 310
Helix 3
AA3
A
58 68Right-handed alpha
Helix 4
AA4
A
69 72Right-handed 310
Helix 5
AA5
A
91 100Right-handed alpha
Helix 6
AA6
A
117 126Right-handed alpha
Helix 7
AA7
A
135 141Right-handed alpha
Helix 8
AA8
A
143 153Right-handed alpha
Helix 9
AA9
A
181 195Right-handed alpha
Helix 10
AB1
A
202 209Right-handed alpha
Helix 11
AB2
A
215 219Right-handed 310
Helix 12
AB3
A
220 226Right-handed alpha
Helix 13
AB4
A
228 232Right-handed 310
Helix 14
AB5
A
250 254Right-handed 310
Helix 15
AB6
A
288 299Right-handed alpha
Helix 16
AB7
A
309 319Right-handed alpha
Helix 17
AB8
A
349 353Right-handed 310
Helix 18
AB9
B
9 23Right-handed alpha
Helix 19
AC1
B
24 26Right-handed 310
Helix 20
AC2
B
58 68Right-handed alpha
Helix 21
AC3
B
69 72Right-handed 310
Helix 22
AC4
B
91 99Right-handed alpha
Helix 23
AC5
B
117 126Right-handed alpha
Helix 24
AC6
B
135 141Right-handed alpha
Helix 25
AC7
B
143 153Right-handed alpha
Helix 26
AC8
B
181 195Right-handed alpha
Helix 27
AC9
B
202 209Right-handed alpha
Helix 28
AD1
B
215 219Right-handed 310
Helix 29
AD2
B
220 226Right-handed alpha
Helix 30
AD3
B
228 232Right-handed 310
Helix 31
AD4
B
250 254Right-handed 310
Helix 32
AD5
B
288 299Right-handed alpha
Helix 33
AD6
B
309 319Right-handed alpha
Helix 34
AD7
B
349 353Right-handed 310
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There are 6 sheets in PDB entry 8DQC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 50first strand
Strand 2
A
36 41anti-parallel
Strand 3
A
74 78anti-parallel
Strand 4
A
101 106parallel
Strand 5
A
129 132parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 279first strand
Strand 2
A
259 263parallel
Strand 3
A
236 241parallel
Strand 4
A
197 201parallel
Strand 5
A
303 306parallel
Strand 6
A
156 163parallel
Strand 7
A
324 329parallel
Strand 8
A
367 373anti-parallel
Strand 9
A
357 364anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 283first strand
Strand 2
A
286 287anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 50first strand
Strand 2
B
36 41anti-parallel
Strand 3
B
75 78anti-parallel
Strand 4
B
103 106parallel
Strand 5
B
129 132parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
275 279first strand
Strand 2
B
259 263parallel
Strand 3
B
236 241parallel
Strand 4
B
197 201parallel
Strand 5
B
303 307parallel
Strand 6
B
156 163parallel
Strand 7
B
324 329parallel
Strand 8
B
367 374anti-parallel
Strand 9
B
356 364anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
282 283first strand
Strand 2
B
286 287anti-parallel
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