Analysis of interatomic Contacts of Structural Units in PDB entry:
8DQH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DQH entry

There are 2 chains in PDB entry 8DQH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 GLY 1ASN 275
A
 VAL 3ASN 275
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8DQH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
6 17Right-handed alpha
Helix 2
AA2
D
20 24Right-handed 310
Helix 3
AA3
D
28 57Right-handed alpha
Helix 4
AA4
D
61 77Right-handed alpha
Helix 5
AA5
D
90 96Right-handed alpha
Helix 6
AA6
D
103 108Right-handed 310
Helix 7
AA7
D
121 134Right-handed alpha
Helix 8
AA8
D
175 191Right-handed alpha
Helix 9
AA9
D
226 233Right-handed alpha
Helix 10
AB1
D
246 255Right-handed alpha
Helix 11
AB2
A
6 17Right-handed alpha
Helix 12
AB3
A
28 57Right-handed alpha
Helix 13
AB4
A
61 77Right-handed alpha
Helix 14
AB5
A
90 96Right-handed alpha
Helix 15
AB6
A
104 108Right-handed 310
Helix 16
AB7
A
121 134Right-handed alpha
Helix 17
AB8
A
175 191Right-handed alpha
Helix 18
AB9
A
246 255Right-handed alpha
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There are 6 sheets in PDB entry 8DQH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
80 81first strand
Strand 2
D
140 149parallel
Strand 3
D
161 170anti-parallel
Strand 4
D
239 245anti-parallel
Strand 5
D
217 224anti-parallel
Strand 6
D
207 214anti-parallel
Strand 7
D
197 203anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
87 89first strand
Strand 2
D
115 117anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
268 269first strand
Strand 2
D
272 273anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 81first strand
Strand 2
A
140 149parallel
Strand 3
A
161 170anti-parallel
Strand 4
A
239 245anti-parallel
Strand 5
A
217 224anti-parallel
Strand 6
A
210 214anti-parallel
Strand 7
A
197 199anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
115 117anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 269first strand
Strand 2
A
272 273anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il