Analysis of interatomic Contacts of Structural Units in PDB entry:
8DQK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DQK entry

There is 1 chain in PDB entry 8DQK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 90ILE 916
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 8DQK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
101 129Right-handed alpha
Helix 2
AA2
A
131 133Right-handed 310
Helix 3
AA3
A
134 157Right-handed alpha
Helix 4
AA4
A
158 160Right-handed 310
Helix 5
AA5
A
169 176Right-handed alpha
Helix 6
AA6
A
201 214Right-handed alpha
Helix 7
AA7
A
232 257Right-handed alpha
Helix 8
AA8
A
262 268Right-handed alpha
Helix 9
AA9
A
279 302Right-handed alpha
Helix 10
AB1
A
302 316Right-handed alpha
Helix 11
AB2
A
405 422Right-handed alpha
Helix 12
AB3
A
440 451Right-handed alpha
Helix 13
AB4
A
479 484Right-handed alpha
Helix 14
AB5
A
486 491Right-handed alpha
Helix 15
AB6
A
579 585Right-handed alpha
Helix 16
AB7
A
587 592Right-handed 310
Helix 17
AB8
A
599 610Right-handed alpha
Helix 18
AB9
A
611 616Right-handed 310
Helix 19
AC1
A
632 643Right-handed alpha
Helix 20
AC2
A
665 686Right-handed alpha
Helix 21
AC3
A
689 693Right-handed 310
Helix 22
AC4
A
698 711Right-handed alpha
Helix 23
AC5
A
713 732Right-handed alpha
Helix 24
AC6
A
740 765Right-handed alpha
Helix 25
AC7
A
768 800Right-handed alpha
Helix 26
AC8
A
822 827Right-handed 310
Helix 27
AC9
A
831 833Right-handed 310
Helix 28
AD1
A
834 857Right-handed alpha
Helix 29
AD2
A
863 867Right-handed 310
Helix 30
AD3
A
868 889Right-handed alpha
Helix 31
AD4
A
890 893Right-handed 310
Helix 32
AD5
A
894 916Right-handed alpha
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There are 3 sheets in PDB entry 8DQK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 99first strand
Strand 2
A
163 167anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 360first strand
Strand 2
A
391 395anti-parallel
Strand 3
A
222 228parallel
Strand 4
A
188 194parallel
Strand 5
A
426 431parallel
Strand 6
A
503 506anti-parallel
Strand 7
A
457 461anti-parallel
Strand 8
A
647 650parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 436first strand
Strand 2
A
658 660anti-parallel
Strand 3
A
464 466parallel
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