Analysis of interatomic Contacts of Structural Units in PDB entry:
8DQM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DQM entry

There are 8 chains in PDB entry 8DQM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 6	GLN 164
B	THR 180	LEU 315
C	TYR 7	MET 162
D	THR 180	GLU 313
E	GLY 6	MET 162
F	THR 180	TYR 312
G	SER 2	GLU 163
H	THR 180	GLN 318

There are 44 helices in PDB entry 8DQM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	23	Right-handed 310
Helix 2	AA2	A	24	48	Right-handed alpha
Helix 3	AA3	A	51	66	Right-handed alpha
Helix 4	AA4	A	108	120	Right-handed alpha
Helix 5	AA5	A	127	137	Right-handed alpha
Helix 6	AA6	A	143	148	Right-handed alpha
Helix 7	AA7	A	149	162	Right-handed alpha
Helix 8	AA8	B	233	241	Right-handed alpha
Helix 9	AA9	B	241	254	Right-handed alpha
Helix 10	AB1	B	256	267	Right-handed alpha
Helix 11	AB2	B	267	272	Right-handed alpha
Helix 12	AB3	C	19	23	Right-handed 310
Helix 13	AB4	C	24	48	Right-handed alpha
Helix 14	AB5	C	51	66	Right-handed alpha
Helix 15	AB6	C	108	120	Right-handed alpha
Helix 16	AB7	C	127	137	Right-handed alpha
Helix 17	AB8	C	143	148	Right-handed alpha
Helix 18	AB9	C	149	160	Right-handed alpha
Helix 19	AC1	D	233	241	Right-handed alpha
Helix 20	AC2	D	241	254	Right-handed alpha
Helix 21	AC3	D	256	267	Right-handed alpha
Helix 22	AC4	D	267	272	Right-handed alpha
Helix 23	AC5	E	19	23	Right-handed 310
Helix 24	AC6	E	24	48	Right-handed alpha
Helix 25	AC7	E	51	66	Right-handed alpha
Helix 26	AC8	E	108	120	Right-handed alpha
Helix 27	AC9	E	127	137	Right-handed alpha
Helix 28	AD1	E	143	148	Right-handed alpha
Helix 29	AD2	E	149	161	Right-handed alpha
Helix 30	AD3	F	233	241	Right-handed alpha
Helix 31	AD4	F	241	254	Right-handed alpha
Helix 32	AD5	F	256	267	Right-handed alpha
Helix 33	AD6	F	267	272	Right-handed alpha
Helix 34	AD7	G	19	23	Right-handed 310
Helix 35	AD8	G	24	48	Right-handed alpha
Helix 36	AD9	G	51	66	Right-handed alpha
Helix 37	AE1	G	108	120	Right-handed alpha
Helix 38	AE2	G	127	137	Right-handed alpha
Helix 39	AE3	G	143	148	Right-handed alpha
Helix 40	AE4	G	149	162	Right-handed alpha
Helix 41	AE5	H	233	241	Right-handed alpha
Helix 42	AE6	H	241	254	Right-handed alpha
Helix 43	AE7	H	256	267	Right-handed alpha
Helix 44	AE8	H	267	272	Right-handed alpha

There are 8 sheets in PDB entry 8DQM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	126	first strand
Strand 2	A	96	103	parallel
Strand 3	A	85	91	anti-parallel
Strand 4	B	192	198	anti-parallel
Strand 5	B	181	186	anti-parallel
Strand 6	A	8	14	anti-parallel
Strand 7	B	297	302	anti-parallel
Strand 8	B	307	310	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	221	first strand
Strand 2	B	226	232	anti-parallel
Strand 3	B	276	282	anti-parallel
Strand 4	B	287	288	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	126	first strand
Strand 2	C	96	103	parallel
Strand 3	C	85	91	anti-parallel
Strand 4	D	192	198	anti-parallel
Strand 5	D	181	186	anti-parallel
Strand 6	C	8	14	anti-parallel
Strand 7	D	297	302	anti-parallel
Strand 8	D	307	310	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	219	221	first strand
Strand 2	D	226	232	anti-parallel
Strand 3	D	276	282	anti-parallel
Strand 4	D	287	288	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	125	126	first strand
Strand 2	E	96	103	parallel
Strand 3	E	85	91	anti-parallel
Strand 4	F	192	198	anti-parallel
Strand 5	F	181	186	anti-parallel
Strand 6	E	8	14	anti-parallel
Strand 7	F	297	302	anti-parallel
Strand 8	F	307	310	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	219	221	first strand
Strand 2	F	226	232	anti-parallel
Strand 3	F	276	282	anti-parallel
Strand 4	F	287	288	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	125	126	first strand
Strand 2	G	96	103	parallel
Strand 3	G	85	91	anti-parallel
Strand 4	H	192	198	anti-parallel
Strand 5	H	181	186	anti-parallel
Strand 6	G	8	14	anti-parallel
Strand 7	H	297	302	anti-parallel
Strand 8	H	307	310	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	219	221	first strand
Strand 2	H	226	232	anti-parallel
Strand 3	H	276	282	anti-parallel
Strand 4	H	287	288	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DQM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DQM