Analysis of interatomic Contacts of Structural Units in PDB entry:
8DQN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DQN entry

There are 8 chains in PDB entry 8DQN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	GLU 388
B	THR 2	GLU 388
C	THR 2	GLU 389
D	THR 2	GLU 388
E	THR 2	GLU 389
F	THR 2	GLU 389
G	THR 2	GLU 388
H	THR 2	GLU 388

There are128 helices in PDB entry 8DQN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	43	Right-handed 310
Helix 2	AA2	A	75	79	Right-handed 310
Helix 3	AA3	A	85	90	Right-handed alpha
Helix 4	AA4	A	108	122	Right-handed alpha
Helix 5	AA5	A	143	151	Right-handed alpha
Helix 6	AA6	A	171	190	Right-handed alpha
Helix 7	AA7	A	206	216	Right-handed alpha
Helix 8	AA8	A	219	221	Right-handed 310
Helix 9	AA9	A	231	242	Right-handed alpha
Helix 10	AB1	A	243	245	Right-handed 310
Helix 11	AB2	A	254	259	Right-handed 310
Helix 12	AB3	A	263	274	Right-handed alpha
Helix 13	AB4	A	277	279	Right-handed 310
Helix 14	AB5	A	309	321	Right-handed alpha
Helix 15	AB6	A	324	332	Right-handed alpha
Helix 16	AB7	A	333	340	Right-handed alpha
Helix 17	AB8	B	41	43	Right-handed 310
Helix 18	AB9	B	75	79	Right-handed 310
Helix 19	AC1	B	85	90	Right-handed alpha
Helix 20	AC2	B	108	122	Right-handed alpha
Helix 21	AC3	B	143	151	Right-handed alpha
Helix 22	AC4	B	171	190	Right-handed alpha
Helix 23	AC5	B	206	216	Right-handed alpha
Helix 24	AC6	B	219	221	Right-handed 310
Helix 25	AC7	B	231	242	Right-handed alpha
Helix 26	AC8	B	243	245	Right-handed 310
Helix 27	AC9	B	254	259	Right-handed 310
Helix 28	AD1	B	263	274	Right-handed alpha
Helix 29	AD2	B	277	279	Right-handed 310
Helix 30	AD3	B	309	321	Right-handed alpha
Helix 31	AD4	B	324	332	Right-handed alpha
Helix 32	AD5	B	333	340	Right-handed alpha
Helix 33	AD6	C	41	43	Right-handed 310
Helix 34	AD7	C	75	79	Right-handed 310
Helix 35	AD8	C	85	90	Right-handed alpha
Helix 36	AD9	C	108	122	Right-handed alpha
Helix 37	AE1	C	143	151	Right-handed alpha
Helix 38	AE2	C	171	190	Right-handed alpha
Helix 39	AE3	C	206	216	Right-handed alpha
Helix 40	AE4	C	219	221	Right-handed 310
Helix 41	AE5	C	231	242	Right-handed alpha
Helix 42	AE6	C	243	245	Right-handed 310
Helix 43	AE7	C	254	259	Right-handed 310
Helix 44	AE8	C	263	274	Right-handed alpha
Helix 45	AE9	C	277	279	Right-handed 310
Helix 46	AF1	C	309	321	Right-handed alpha
Helix 47	AF2	C	324	332	Right-handed alpha
Helix 48	AF3	C	333	340	Right-handed alpha
Helix 49	AF4	D	41	43	Right-handed 310
Helix 50	AF5	D	75	79	Right-handed 310
Helix 51	AF6	D	85	90	Right-handed alpha
Helix 52	AF7	D	108	122	Right-handed alpha
Helix 53	AF8	D	143	151	Right-handed alpha
Helix 54	AF9	D	171	190	Right-handed alpha
Helix 55	AG1	D	206	216	Right-handed alpha
Helix 56	AG2	D	219	221	Right-handed 310
Helix 57	AG3	D	231	242	Right-handed alpha
Helix 58	AG4	D	243	245	Right-handed 310
Helix 59	AG5	D	254	259	Right-handed 310
Helix 60	AG6	D	263	274	Right-handed alpha
Helix 61	AG7	D	277	279	Right-handed 310
Helix 62	AG8	D	309	321	Right-handed alpha
Helix 63	AG9	D	324	332	Right-handed alpha
Helix 64	AH1	D	333	340	Right-handed alpha
Helix 65	AH2	E	41	43	Right-handed 310
Helix 66	AH3	E	75	79	Right-handed 310
Helix 67	AH4	E	85	90	Right-handed alpha
Helix 68	AH5	E	108	122	Right-handed alpha
Helix 69	AH6	E	143	151	Right-handed alpha
Helix 70	AH7	E	171	190	Right-handed alpha
Helix 71	AH8	E	206	216	Right-handed alpha
Helix 72	AH9	E	219	221	Right-handed 310
Helix 73	AI1	E	231	242	Right-handed alpha
Helix 74	AI2	E	243	245	Right-handed 310
Helix 75	AI3	E	254	259	Right-handed 310
Helix 76	AI4	E	263	274	Right-handed alpha
Helix 77	AI5	E	277	279	Right-handed 310
Helix 78	AI6	E	309	321	Right-handed alpha
Helix 79	AI7	E	324	333	Right-handed alpha
Helix 80	AI8	E	333	340	Right-handed alpha
Helix 81	AI9	F	41	43	Right-handed 310
Helix 82	AJ1	F	75	79	Right-handed 310
Helix 83	AJ2	F	85	90	Right-handed alpha
Helix 84	AJ3	F	108	122	Right-handed alpha
Helix 85	AJ4	F	143	151	Right-handed alpha
Helix 86	AJ5	F	171	190	Right-handed alpha
Helix 87	AJ6	F	206	216	Right-handed alpha
Helix 88	AJ7	F	219	221	Right-handed 310
Helix 89	AJ8	F	231	242	Right-handed alpha
Helix 90	AJ9	F	243	245	Right-handed 310
Helix 91	AK1	F	254	259	Right-handed 310
Helix 92	AK2	F	263	274	Right-handed alpha
Helix 93	AK3	F	277	279	Right-handed 310
Helix 94	AK4	F	309	321	Right-handed alpha
Helix 95	AK5	F	324	332	Right-handed alpha
Helix 96	AK6	F	333	340	Right-handed alpha
Helix 97	AK7	G	41	43	Right-handed 310
Helix 98	AK8	G	75	79	Right-handed 310
Helix 99	AK9	G	85	90	Right-handed alpha
Helix 100	AL1	G	108	122	Right-handed alpha
Helix 101	AL2	G	143	151	Right-handed alpha
Helix 102	AL3	G	171	190	Right-handed alpha
Helix 103	AL4	G	206	216	Right-handed alpha
Helix 104	AL5	G	219	221	Right-handed 310
Helix 105	AL6	G	231	242	Right-handed alpha
Helix 106	AL7	G	243	245	Right-handed 310
Helix 107	AL8	G	254	258	Right-handed 310
Helix 108	AL9	G	263	274	Right-handed alpha
Helix 109	AM1	G	277	279	Right-handed 310
Helix 110	AM2	G	309	321	Right-handed alpha
Helix 111	AM3	G	324	333	Right-handed alpha
Helix 112	AM4	G	333	340	Right-handed alpha
Helix 113	AM5	H	41	43	Right-handed 310
Helix 114	AM6	H	75	79	Right-handed 310
Helix 115	AM7	H	85	90	Right-handed alpha
Helix 116	AM8	H	108	122	Right-handed alpha
Helix 117	AM9	H	143	151	Right-handed alpha
Helix 118	AN1	H	171	190	Right-handed alpha
Helix 119	AN2	H	206	216	Right-handed alpha
Helix 120	AN3	H	219	221	Right-handed 310
Helix 121	AN4	H	231	242	Right-handed alpha
Helix 122	AN5	H	243	245	Right-handed 310
Helix 123	AN6	H	254	259	Right-handed 310
Helix 124	AN7	H	263	274	Right-handed alpha
Helix 125	AN8	H	277	279	Right-handed 310
Helix 126	AN9	H	309	321	Right-handed alpha
Helix 127	AO1	H	324	332	Right-handed alpha
Helix 128	AO2	H	333	340	Right-handed alpha

There are 40 sheets in PDB entry 8DQN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	34	first strand
Strand 2	A	17	26	anti-parallel
Strand 3	A	4	13	anti-parallel
Strand 4	A	45	50	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	34	first strand
Strand 2	A	17	26	anti-parallel
Strand 3	A	4	13	anti-parallel
Strand 4	A	55	58	parallel
Strand 5	A	356	359	anti-parallel
Strand 6	A	365	370	anti-parallel
Strand 7	A	373	377	anti-parallel
Strand 8	A	380	381	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	65	first strand
Strand 2	A	93	98	parallel
Strand 3	A	125	131	parallel
Strand 4	A	154	162	parallel
Strand 5	A	195	199	parallel
Strand 6	A	223	226	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	251	first strand
Strand 2	A	281	284	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	293	first strand
Strand 2	A	302	305	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	34	first strand
Strand 2	B	17	26	anti-parallel
Strand 3	B	4	13	anti-parallel
Strand 4	B	45	50	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	34	first strand
Strand 2	B	17	26	anti-parallel
Strand 3	B	4	13	anti-parallel
Strand 4	B	55	58	parallel
Strand 5	B	356	359	anti-parallel
Strand 6	B	365	370	anti-parallel
Strand 7	B	373	377	anti-parallel
Strand 8	B	380	381	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	65	first strand
Strand 2	B	93	98	parallel
Strand 3	B	125	131	parallel
Strand 4	B	154	162	parallel
Strand 5	B	194	199	parallel
Strand 6	B	223	226	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	251	first strand
Strand 2	B	281	284	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	291	first strand
Strand 2	B	304	305	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	34	first strand
Strand 2	C	17	26	anti-parallel
Strand 3	C	4	13	anti-parallel
Strand 4	C	45	50	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	34	first strand
Strand 2	C	17	26	anti-parallel
Strand 3	C	4	13	anti-parallel
Strand 4	C	55	58	parallel
Strand 5	C	356	359	anti-parallel
Strand 6	C	365	370	anti-parallel
Strand 7	C	373	377	anti-parallel
Strand 8	C	380	381	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	65	first strand
Strand 2	C	93	98	parallel
Strand 3	C	125	131	parallel
Strand 4	C	154	162	parallel
Strand 5	C	194	199	parallel
Strand 6	C	223	226	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	251	first strand
Strand 2	C	281	284	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	290	294	first strand
Strand 2	C	300	305	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	34	first strand
Strand 2	D	17	26	anti-parallel
Strand 3	D	4	13	anti-parallel
Strand 4	D	45	50	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	34	first strand
Strand 2	D	17	26	anti-parallel
Strand 3	D	4	13	anti-parallel
Strand 4	D	55	58	parallel
Strand 5	D	356	359	anti-parallel
Strand 6	D	365	370	anti-parallel
Strand 7	D	373	377	anti-parallel
Strand 8	D	380	381	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	65	first strand
Strand 2	D	93	98	parallel
Strand 3	D	125	131	parallel
Strand 4	D	154	162	parallel
Strand 5	D	194	199	parallel
Strand 6	D	223	226	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	251	first strand
Strand 2	D	281	284	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	290	292	first strand
Strand 2	D	303	305	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	34	first strand
Strand 2	E	17	26	anti-parallel
Strand 3	E	4	13	anti-parallel
Strand 4	E	45	50	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	34	first strand
Strand 2	E	17	26	anti-parallel
Strand 3	E	4	13	anti-parallel
Strand 4	E	55	58	parallel
Strand 5	E	356	359	anti-parallel
Strand 6	E	365	370	anti-parallel
Strand 7	E	373	377	anti-parallel
Strand 8	E	380	381	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	65	first strand
Strand 2	E	93	98	parallel
Strand 3	E	125	131	parallel
Strand 4	E	154	162	parallel
Strand 5	E	195	199	parallel
Strand 6	E	223	226	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	248	251	first strand
Strand 2	E	281	284	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	290	292	first strand
Strand 2	E	303	305	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	34	first strand
Strand 2	F	17	26	anti-parallel
Strand 3	F	4	13	anti-parallel
Strand 4	F	45	50	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	34	first strand
Strand 2	F	17	26	anti-parallel
Strand 3	F	4	13	anti-parallel
Strand 4	F	55	58	parallel
Strand 5	F	356	359	anti-parallel
Strand 6	F	365	370	anti-parallel
Strand 7	F	373	377	anti-parallel
Strand 8	F	380	381	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	60	65	first strand
Strand 2	F	93	98	parallel
Strand 3	F	125	131	parallel
Strand 4	F	154	162	parallel
Strand 5	F	194	199	parallel
Strand 6	F	223	226	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	248	251	first strand
Strand 2	F	281	284	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	290	293	first strand
Strand 2	F	302	305	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	29	34	first strand
Strand 2	G	17	26	anti-parallel
Strand 3	G	4	13	anti-parallel
Strand 4	G	45	50	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	29	34	first strand
Strand 2	G	17	26	anti-parallel
Strand 3	G	4	13	anti-parallel
Strand 4	G	55	58	parallel
Strand 5	G	356	359	anti-parallel
Strand 6	G	365	370	anti-parallel
Strand 7	G	373	377	anti-parallel
Strand 8	G	380	381	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	60	65	first strand
Strand 2	G	93	98	parallel
Strand 3	G	125	131	parallel
Strand 4	G	154	162	parallel
Strand 5	G	194	199	parallel
Strand 6	G	223	226	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	248	251	first strand
Strand 2	G	281	284	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	290	291	first strand
Strand 2	G	304	305	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	29	34	first strand
Strand 2	H	17	26	anti-parallel
Strand 3	H	4	13	anti-parallel
Strand 4	H	45	50	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	29	34	first strand
Strand 2	H	17	26	anti-parallel
Strand 3	H	4	13	anti-parallel
Strand 4	H	55	58	parallel
Strand 5	H	356	359	anti-parallel
Strand 6	H	365	370	anti-parallel
Strand 7	H	373	377	anti-parallel
Strand 8	H	380	381	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	60	65	first strand
Strand 2	H	93	98	parallel
Strand 3	H	125	131	parallel
Strand 4	H	154	162	parallel
Strand 5	H	195	199	parallel
Strand 6	H	223	226	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	248	251	first strand
Strand 2	H	281	284	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	290	292	first strand
Strand 2	H	303	305	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DQN

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DQN