Analysis of interatomic Contacts of Structural Units in PDB entry:
8DQP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DQP entry

There are 2 chains in PDB entry 8DQP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	SER 451
B	ASP 8	SER 451

There are 34 helices in PDB entry 8DQP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	33	37	Right-handed 310
Helix 2	AA2	A	57	74	Right-handed alpha
Helix 3	AA3	A	75	77	Right-handed 310
Helix 4	AA4	A	120	125	Right-handed alpha
Helix 5	AA5	A	126	128	Right-handed 310
Helix 6	AA6	A	134	138	Right-handed 310
Helix 7	AA7	A	165	181	Right-handed alpha
Helix 8	AA8	A	193	198	Right-handed alpha
Helix 9	AA9	A	207	212	Right-handed alpha
Helix 10	AB1	A	221	225	Right-handed 310
Helix 11	AB2	A	239	254	Right-handed alpha
Helix 12	AB3	A	258	275	Right-handed alpha
Helix 13	AB4	A	317	323	Right-handed alpha
Helix 14	AB5	A	324	334	Right-handed alpha
Helix 15	AB6	A	335	339	Right-handed 310
Helix 16	AB7	A	340	355	Right-handed alpha
Helix 17	AB8	A	375	379	Right-handed 310
Helix 18	AB9	A	432	445	Right-handed alpha
Helix 19	AC1	B	33	37	Right-handed 310
Helix 20	AC2	B	57	70	Right-handed alpha
Helix 21	AC3	B	73	78	Right-handed 310
Helix 22	AC4	B	123	128	Right-handed 310
Helix 23	AC5	B	132	139	Right-handed alpha
Helix 24	AC6	B	165	181	Right-handed alpha
Helix 25	AC7	B	193	198	Right-handed alpha
Helix 26	AC8	B	207	212	Right-handed alpha
Helix 27	AC9	B	239	254	Right-handed alpha
Helix 28	AD1	B	258	275	Right-handed alpha
Helix 29	AD2	B	317	323	Right-handed alpha
Helix 30	AD3	B	324	334	Right-handed alpha
Helix 31	AD4	B	335	339	Right-handed 310
Helix 32	AD5	B	340	355	Right-handed alpha
Helix 33	AD6	B	375	379	Right-handed 310
Helix 34	AD7	B	432	445	Right-handed alpha

There are 8 sheets in PDB entry 8DQP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	12	first strand
Strand 2	A	99	105	anti-parallel
Strand 3	A	141	148	parallel
Strand 4	A	152	160	anti-parallel
Strand 5	A	39	46	anti-parallel
Strand 6	A	388	391	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	26	first strand
Strand 2	A	89	93	anti-parallel
Strand 3	A	79	82	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	216	first strand
Strand 2	A	359	360	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	238	first strand
Strand 2	A	421	429	anti-parallel
Strand 3	A	403	405	anti-parallel
Strand 4	A	365	370	parallel
Strand 5	A	282	290	parallel
Strand 6	A	308	316	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	12	first strand
Strand 2	B	99	104	anti-parallel
Strand 3	B	143	147	parallel
Strand 4	B	153	160	anti-parallel
Strand 5	B	39	46	anti-parallel
Strand 6	B	388	391	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	26	first strand
Strand 2	B	90	93	anti-parallel
Strand 3	B	79	81	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	216	first strand
Strand 2	B	359	360	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	238	first strand
Strand 2	B	421	429	anti-parallel
Strand 3	B	403	406	anti-parallel
Strand 4	B	365	370	parallel
Strand 5	B	282	290	parallel
Strand 6	B	308	316	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DQP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DQP