Analysis of interatomic Contacts of Structural Units in PDB entry:
8DQR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DQR entry

There are 2 chains in PDB entry 8DQR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2GLY 307
A
 VAL 309SER 451
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8DQR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 37Right-handed 310
Helix 2
AA2
A
57 70Right-handed alpha
Helix 3
AA3
A
71 72Right-handed 310
Helix 4
AA4
A
73 78Right-handed 310
Helix 5
AA5
A
110 117Right-handed 310
Helix 6
AA6
A
123 128Right-handed 310
Helix 7
AA7
A
134 139Right-handed alpha
Helix 8
AA8
A
165 181Right-handed alpha
Helix 9
AA9
A
193 198Right-handed alpha
Helix 10
AB1
A
207 212Right-handed alpha
Helix 11
AB2
A
239 254Right-handed alpha
Helix 12
AB3
A
258 275Right-handed alpha
Helix 13
AB4
A
317 323Right-handed alpha
Helix 14
AB5
A
324 336Right-handed alpha
Helix 15
AB6
A
340 355Right-handed alpha
Helix 16
AB7
A
432 445Right-handed alpha
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There are 4 sheets in PDB entry 8DQR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 12first strand
Strand 2
A
99 106anti-parallel
Strand 3
A
141 147parallel
Strand 4
A
153 160anti-parallel
Strand 5
A
39 46anti-parallel
Strand 6
A
388 391anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 26first strand
Strand 2
A
89 93anti-parallel
Strand 3
A
79 82anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 216first strand
Strand 2
A
359 360anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 238first strand
Strand 2
A
421 429anti-parallel
Strand 3
A
403 405anti-parallel
Strand 4
A
365 370parallel
Strand 5
A
282 290parallel
Strand 6
A
308 316anti-parallel
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