Analysis of interatomic Contacts of Structural Units in PDB entry:
8DQV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DQV entry

There are 6 chains in PDB entry 8DQV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 4	PRO 165
A	SER 167	HIS 516
B	ALA 2	VAL 323
C	LEU 4	PRO 165
C	SER 167	HIS 516
D	ALA 2	VAL 323

There are 88 helices in PDB entry 8DQV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	47	Right-handed alpha
Helix 2	AA2	A	52	58	Right-handed alpha
Helix 3	AA3	A	59	62	Right-handed 310
Helix 4	AA4	A	65	81	Right-handed alpha
Helix 5	AA5	A	86	112	Right-handed alpha
Helix 6	AA6	A	113	123	Right-handed 310
Helix 7	AA7	A	127	136	Right-handed alpha
Helix 8	AA8	A	142	150	Right-handed alpha
Helix 9	AA9	A	150	162	Right-handed alpha
Helix 10	AB1	A	180	198	Right-handed alpha
Helix 11	AB2	A	207	213	Right-handed alpha
Helix 12	AB3	A	216	227	Right-handed alpha
Helix 13	AB4	A	227	232	Right-handed alpha
Helix 14	AB5	A	233	246	Right-handed alpha
Helix 15	AB6	A	266	269	Right-handed 310
Helix 16	AB7	A	276	280	Right-handed alpha
Helix 17	AB8	A	297	299	Right-handed 310
Helix 18	AB9	A	317	321	Right-handed 310
Helix 19	AC1	A	327	334	Right-handed alpha
Helix 20	AC2	A	358	367	Right-handed alpha
Helix 21	AC3	A	379	388	Right-handed alpha
Helix 22	AC4	A	391	417	Right-handed alpha
Helix 23	AC5	A	464	471	Right-handed alpha
Helix 24	AC6	A	480	487	Right-handed alpha
Helix 25	AC7	A	497	507	Right-handed alpha
Helix 26	AC8	A	510	516	Right-handed alpha
Helix 27	AC9	B	13	21	Right-handed alpha
Helix 28	AD1	B	26	34	Right-handed alpha
Helix 29	AD2	B	48	61	Right-handed alpha
Helix 30	AD3	B	93	103	Right-handed alpha
Helix 31	AD4	B	111	116	Right-handed alpha
Helix 32	AD5	B	118	122	Right-handed 310
Helix 33	AD6	B	164	177	Right-handed alpha
Helix 34	AD7	B	179	183	Right-handed 310
Helix 35	AD8	B	191	196	Right-handed alpha
Helix 36	AD9	B	205	211	Right-handed alpha
Helix 37	AE1	B	218	224	Right-handed 310
Helix 38	AE2	B	227	232	Right-handed alpha
Helix 39	AE3	B	234	238	Right-handed 310
Helix 40	AE4	B	246	250	Right-handed 310
Helix 41	AE5	B	252	257	Right-handed alpha
Helix 42	AE6	B	269	274	Right-handed 310
Helix 43	AE7	B	297	312	Right-handed alpha
Helix 44	AE8	B	313	318	Right-handed 310
Helix 45	AE9	C	41	47	Right-handed alpha
Helix 46	AF1	C	52	58	Right-handed alpha
Helix 47	AF2	C	59	62	Right-handed 310
Helix 48	AF3	C	65	81	Right-handed alpha
Helix 49	AF4	C	86	112	Right-handed alpha
Helix 50	AF5	C	113	123	Right-handed 310
Helix 51	AF6	C	127	136	Right-handed alpha
Helix 52	AF7	C	142	150	Right-handed alpha
Helix 53	AF8	C	150	162	Right-handed alpha
Helix 54	AF9	C	180	198	Right-handed alpha
Helix 55	AG1	C	207	213	Right-handed alpha
Helix 56	AG2	C	216	227	Right-handed alpha
Helix 57	AG3	C	227	232	Right-handed alpha
Helix 58	AG4	C	233	246	Right-handed alpha
Helix 59	AG5	C	266	269	Right-handed 310
Helix 60	AG6	C	276	280	Right-handed alpha
Helix 61	AG7	C	297	299	Right-handed 310
Helix 62	AG8	C	317	321	Right-handed 310
Helix 63	AG9	C	327	334	Right-handed alpha
Helix 64	AH1	C	358	367	Right-handed alpha
Helix 65	AH2	C	379	388	Right-handed alpha
Helix 66	AH3	C	391	417	Right-handed alpha
Helix 67	AH4	C	464	471	Right-handed alpha
Helix 68	AH5	C	480	487	Right-handed alpha
Helix 69	AH6	C	497	507	Right-handed alpha
Helix 70	AH7	C	510	516	Right-handed alpha
Helix 71	AH8	D	13	21	Right-handed alpha
Helix 72	AH9	D	26	34	Right-handed alpha
Helix 73	AI1	D	48	61	Right-handed alpha
Helix 74	AI2	D	93	103	Right-handed alpha
Helix 75	AI3	D	111	116	Right-handed alpha
Helix 76	AI4	D	118	122	Right-handed 310
Helix 77	AI5	D	164	177	Right-handed alpha
Helix 78	AI6	D	179	183	Right-handed 310
Helix 79	AI7	D	191	196	Right-handed alpha
Helix 80	AI8	D	205	211	Right-handed alpha
Helix 81	AI9	D	218	224	Right-handed 310
Helix 82	AJ1	D	227	232	Right-handed alpha
Helix 83	AJ2	D	234	238	Right-handed 310
Helix 84	AJ3	D	246	250	Right-handed 310
Helix 85	AJ4	D	252	257	Right-handed alpha
Helix 86	AJ5	D	269	274	Right-handed 310
Helix 87	AJ6	D	297	312	Right-handed alpha
Helix 88	AJ7	D	313	318	Right-handed 310

There are 22 sheets in PDB entry 8DQV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	8	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	28	36	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	171	first strand
Strand 2	A	174	175	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	294	first strand
Strand 2	A	286	289	anti-parallel
Strand 3	A	257	259	anti-parallel
Strand 4	A	356	357	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	264	first strand
Strand 2	A	281	283	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	304	first strand
Strand 2	A	342	347	anti-parallel
Strand 3	A	351	353	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	433	441	first strand
Strand 2	A	444	453	anti-parallel
Strand 3	A	456	463	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	40	first strand
Strand 2	B	3	8	parallel
Strand 3	B	66	72	parallel
Strand 4	B	104	110	parallel
Strand 5	B	156	158	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	76	first strand
Strand 2	B	129	130	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	88	first strand
Strand 2	B	91	92	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	135	first strand
Strand 2	B	138	139	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	284	first strand
Strand 2	B	288	289	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	8	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	28	36	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	171	first strand
Strand 2	C	174	175	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	292	294	first strand
Strand 2	C	286	289	anti-parallel
Strand 3	C	257	259	anti-parallel
Strand 4	C	356	357	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	262	264	first strand
Strand 2	C	281	283	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	304	first strand
Strand 2	C	342	347	anti-parallel
Strand 3	C	351	353	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	433	441	first strand
Strand 2	C	444	453	anti-parallel
Strand 3	C	456	463	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	40	first strand
Strand 2	D	3	8	parallel
Strand 3	D	66	72	parallel
Strand 4	D	104	110	parallel
Strand 5	D	156	158	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	76	first strand
Strand 2	D	129	130	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	88	first strand
Strand 2	D	91	92	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	135	first strand
Strand 2	D	138	139	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	283	284	first strand
Strand 2	D	288	289	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DQV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DQV