Analysis of interatomic Contacts of Structural Units in PDB entry:
8DR1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DR1 entry

There are 12 chains in PDB entry 8DR1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 288	ARG 785
B	THR 4	ASN 321
C	LYS 7	VAL 336
D	ARG 11	LEU 353
E	MET 1	ASP 354
F	ALA -1	ASP 256
G	ALA -1	ASN 255
H	SER 0	PHE 254
I	T 10	G 28
J	C 13	C 30
K	T -2	A 10
L	C 1	T 13

There are137 helices in PDB entry 8DR1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	292	296	Right-handed 310
Helix 2	AA2	A	297	302	Right-handed alpha
Helix 3	AA3	A	306	310	Right-handed 310
Helix 4	AA4	A	313	326	Right-handed alpha
Helix 5	AA5	A	326	333	Right-handed alpha
Helix 6	AA6	A	342	346	Right-handed 310
Helix 7	AA7	A	358	370	Right-handed alpha
Helix 8	AA8	A	384	391	Right-handed alpha
Helix 9	AA9	A	392	396	Right-handed 310
Helix 10	AB1	A	400	406	Right-handed alpha
Helix 11	AB2	A	425	429	Right-handed 310
Helix 12	AB3	A	436	447	Right-handed alpha
Helix 13	AB4	A	460	467	Right-handed 310
Helix 14	AB5	A	483	495	Right-handed alpha
Helix 15	AB6	A	502	511	Right-handed alpha
Helix 16	AB7	A	513	526	Right-handed alpha
Helix 17	AB8	A	535	544	Right-handed alpha
Helix 18	AB9	A	550	559	Right-handed alpha
Helix 19	AC1	A	560	564	Right-handed 310
Helix 20	AC2	A	565	572	Right-handed alpha
Helix 21	AC3	A	573	584	Right-handed alpha
Helix 22	AC4	A	587	596	Right-handed alpha
Helix 23	AC5	A	609	632	Right-handed alpha
Helix 24	AC6	A	637	639	Right-handed 310
Helix 25	AC7	A	640	649	Right-handed alpha
Helix 26	AC8	A	649	657	Right-handed alpha
Helix 27	AC9	A	668	691	Right-handed alpha
Helix 28	AD1	A	697	704	Right-handed alpha
Helix 29	AD2	A	704	714	Right-handed alpha
Helix 30	AD3	A	714	721	Right-handed alpha
Helix 31	AD4	A	724	735	Right-handed alpha
Helix 32	AD5	A	738	749	Right-handed alpha
Helix 33	AD6	A	750	754	Right-handed 310
Helix 34	AD7	A	755	762	Right-handed alpha
Helix 35	AD8	A	763	776	Right-handed alpha
Helix 36	AD9	B	10	15	Right-handed alpha
Helix 37	AE1	B	19	23	Right-handed 310
Helix 38	AE2	B	26	40	Right-handed alpha
Helix 39	AE3	B	54	68	Right-handed alpha
Helix 40	AE4	B	70	74	Right-handed alpha
Helix 41	AE5	B	85	99	Right-handed alpha
Helix 42	AE6	B	116	119	Right-handed 310
Helix 43	AE7	B	120	134	Right-handed alpha
Helix 44	AE8	B	146	150	Right-handed 310
Helix 45	AE9	B	151	157	Right-handed alpha
Helix 46	AF1	B	167	183	Right-handed alpha
Helix 47	AF2	B	187	199	Right-handed alpha
Helix 48	AF3	B	201	217	Right-handed alpha
Helix 49	AF4	B	220	228	Right-handed alpha
Helix 50	AF5	B	231	242	Right-handed alpha
Helix 51	AF6	B	244	256	Right-handed alpha
Helix 52	AF7	B	262	276	Right-handed alpha
Helix 53	AF8	B	281	301	Right-handed alpha
Helix 54	AF9	B	305	321	Right-handed alpha
Helix 55	AG1	C	9	13	Right-handed 310
Helix 56	AG2	C	14	19	Right-handed alpha
Helix 57	AG3	C	23	27	Right-handed 310
Helix 58	AG4	C	30	43	Right-handed alpha
Helix 59	AG5	C	58	72	Right-handed alpha
Helix 60	AG6	C	74	77	Right-handed 310
Helix 61	AG7	C	89	103	Right-handed alpha
Helix 62	AG8	C	118	122	Right-handed 310
Helix 63	AG9	C	123	137	Right-handed alpha
Helix 64	AH1	C	149	153	Right-handed 310
Helix 65	AH2	C	154	160	Right-handed alpha
Helix 66	AH3	C	170	186	Right-handed alpha
Helix 67	AH4	C	190	202	Right-handed alpha
Helix 68	AH5	C	204	219	Right-handed alpha
Helix 69	AH6	C	228	237	Right-handed alpha
Helix 70	AH7	C	240	254	Right-handed alpha
Helix 71	AH8	C	255	271	Right-handed alpha
Helix 72	AH9	C	273	288	Right-handed alpha
Helix 73	AI1	C	292	312	Right-handed alpha
Helix 74	AI2	C	315	332	Right-handed alpha
Helix 75	AI3	C	333	335	Right-handed 310
Helix 76	AI4	D	17	24	Right-handed alpha
Helix 77	AI5	D	26	31	Right-handed alpha
Helix 78	AI6	D	35	39	Right-handed 310
Helix 79	AI7	D	42	56	Right-handed alpha
Helix 80	AI8	D	70	84	Right-handed alpha
Helix 81	AI9	D	87	91	Right-handed alpha
Helix 82	AJ1	D	102	116	Right-handed alpha
Helix 83	AJ2	D	122	129	Right-handed alpha
Helix 84	AJ3	D	141	145	Right-handed 310
Helix 85	AJ4	D	146	152	Right-handed alpha
Helix 86	AJ5	D	153	160	Right-handed alpha
Helix 87	AJ6	D	172	176	Right-handed 310
Helix 88	AJ7	D	177	184	Right-handed alpha
Helix 89	AJ8	D	193	208	Right-handed alpha
Helix 90	AJ9	D	215	225	Right-handed alpha
Helix 91	AK1	D	227	246	Right-handed alpha
Helix 92	AK2	D	252	260	Right-handed alpha
Helix 93	AK3	D	264	278	Right-handed alpha
Helix 94	AK4	D	279	292	Right-handed alpha
Helix 95	AK5	D	296	310	Right-handed alpha
Helix 96	AK6	D	315	334	Right-handed alpha
Helix 97	AK7	D	338	352	Right-handed alpha
Helix 98	AK8	E	3	8	Right-handed alpha
Helix 99	AK9	E	12	16	Right-handed 310
Helix 100	AL1	E	19	32	Right-handed alpha
Helix 101	AL2	E	33	36	Right-handed 310
Helix 102	AL3	E	48	62	Right-handed alpha
Helix 103	AL4	E	63	67	Right-handed 310
Helix 104	AL5	E	97	103	Right-handed 310
Helix 105	AL6	E	104	111	Right-handed alpha
Helix 106	AL7	E	111	118	Right-handed alpha
Helix 107	AL8	E	143	146	Right-handed 310
Helix 108	AL9	E	147	161	Right-handed alpha
Helix 109	AM1	E	178	184	Right-handed alpha
Helix 110	AM2	E	194	210	Right-handed alpha
Helix 111	AM3	E	216	227	Right-handed alpha
Helix 112	AM4	E	229	244	Right-handed alpha
Helix 113	AM5	E	257	273	Right-handed alpha
Helix 114	AM6	E	275	292	Right-handed alpha
Helix 115	AM7	E	295	309	Right-handed alpha
Helix 116	AM8	E	314	335	Right-handed alpha
Helix 117	AM9	E	337	354	Right-handed alpha
Helix 118	AN1	F	8	20	Right-handed alpha
Helix 119	AN2	F	55	57	Right-handed 310
Helix 120	AN3	F	72	80	Right-handed alpha
Helix 121	AN4	F	141	153	Right-handed alpha
Helix 122	AN5	F	190	194	Right-handed 310
Helix 123	AN6	F	209	216	Right-handed alpha
Helix 124	AN7	F	217	221	Right-handed 310
Helix 125	AN8	G	8	20	Right-handed alpha
Helix 126	AN9	G	55	57	Right-handed 310
Helix 127	AO1	G	72	80	Right-handed alpha
Helix 128	AO2	G	141	153	Right-handed alpha
Helix 129	AO3	G	190	194	Right-handed 310
Helix 130	AO4	G	209	216	Right-handed alpha
Helix 131	AO5	G	217	221	Right-handed 310
Helix 132	AO6	H	9	19	Right-handed alpha
Helix 133	AO7	H	55	57	Right-handed 310
Helix 134	AO8	H	72	81	Right-handed alpha
Helix 135	AO9	H	141	155	Right-handed alpha
Helix 136	AP1	H	209	216	Right-handed alpha
Helix 137	AP2	H	217	221	Right-handed 310

There are 14 sheets in PDB entry 8DR1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	377	first strand
Strand 2	A	419	423	parallel
Strand 3	A	451	455	parallel
Strand 4	A	348	352	parallel
Strand 5	A	471	474	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	498	first strand
Strand 2	A	530	531	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	599	601	first strand
Strand 2	A	658	660	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	78	first strand
Strand 2	B	109	114	parallel
Strand 3	B	138	144	parallel
Strand 4	B	45	48	parallel
Strand 5	B	159	162	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	82	first strand
Strand 2	C	112	116	parallel
Strand 3	C	141	147	parallel
Strand 4	C	49	52	parallel
Strand 5	C	162	165	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	95	first strand
Strand 2	D	135	139	parallel
Strand 3	D	164	170	parallel
Strand 4	D	61	64	parallel
Strand 5	D	185	188	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	69	76	first strand
Strand 2	E	82	89	anti-parallel
Strand 3	E	93	96	anti-parallel
Strand 4	E	136	141	parallel
Strand 5	E	165	171	parallel
Strand 6	E	39	42	parallel
Strand 7	E	186	189	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	212	213	first strand
Strand 2	E	247	248	parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	62	first strand
Strand 2	F	2	6	anti-parallel
Strand 3	F	87	92	anti-parallel
Strand 4	F	98	105	anti-parallel
Strand 5	F	110	117	anti-parallel
Strand 6	H	176	182	anti-parallel
Strand 7	H	166	172	anti-parallel
Strand 8	H	157	163	anti-parallel
Strand 9	H	203	208	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	71	first strand
Strand 2	F	25	31	anti-parallel
Strand 3	F	34	40	anti-parallel
Strand 4	F	46	53	anti-parallel
Strand 5	F	244	250	anti-parallel
Strand 6	F	233	240	anti-parallel
Strand 7	F	224	230	anti-parallel
Strand 8	F	135	140	anti-parallel
Strand 9	F	196	199	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	203	208	first strand
Strand 2	F	157	163	anti-parallel
Strand 3	F	166	172	anti-parallel
Strand 4	F	176	182	anti-parallel
Strand 5	G	111	117	anti-parallel
Strand 6	G	98	104	anti-parallel
Strand 7	G	87	92	anti-parallel
Strand 8	G	2	6	anti-parallel
Strand 9	G	61	62	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	66	71	first strand
Strand 2	G	25	31	anti-parallel
Strand 3	G	34	40	anti-parallel
Strand 4	G	46	53	anti-parallel
Strand 5	G	245	250	anti-parallel
Strand 6	G	235	240	anti-parallel
Strand 7	G	224	229	anti-parallel
Strand 8	G	135	140	anti-parallel
Strand 9	G	196	199	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	203	208	first strand
Strand 2	G	157	163	anti-parallel
Strand 3	G	166	172	anti-parallel
Strand 4	G	176	182	anti-parallel
Strand 5	H	110	117	anti-parallel
Strand 6	H	98	105	anti-parallel
Strand 7	H	87	91	anti-parallel
Strand 8	H	3	6	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	66	71	first strand
Strand 2	H	25	31	anti-parallel
Strand 3	H	34	40	anti-parallel
Strand 4	H	46	53	anti-parallel
Strand 5	H	245	250	anti-parallel
Strand 6	H	235	240	anti-parallel
Strand 7	H	224	229	anti-parallel
Strand 8	H	135	140	anti-parallel
Strand 9	H	196	199	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DR1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DR1