Analysis of interatomic Contacts of Structural Units in PDB entry:
8DR4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DR4 entry

There are 12 chains in PDB entry 8DR4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 290	THR 786
B	THR 4	ASN 321
C	GLU 6	THR 335
D	LEU 22	LEU 353
E	SER 2	LEU 353
F	SER 0	ASP 256
G	SER 0	ASN 255
H	MET 1	GLU 258
I	T 10	G 28
J	C 13	C 30
K	A -1	G 10
L	C 1	T 13

There are134 helices in PDB entry 8DR4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	292	296	Right-handed 310
Helix 2	AA2	A	297	302	Right-handed alpha
Helix 3	AA3	A	313	326	Right-handed alpha
Helix 4	AA4	A	326	333	Right-handed alpha
Helix 5	AA5	A	342	346	Right-handed 310
Helix 6	AA6	A	358	370	Right-handed alpha
Helix 7	AA7	A	384	391	Right-handed alpha
Helix 8	AA8	A	391	396	Right-handed alpha
Helix 9	AA9	A	400	407	Right-handed alpha
Helix 10	AB1	A	414	417	Right-handed 310
Helix 11	AB2	A	425	429	Right-handed 310
Helix 12	AB3	A	435	446	Right-handed alpha
Helix 13	AB4	A	460	467	Right-handed 310
Helix 14	AB5	A	479	482	Right-handed 310
Helix 15	AB6	A	483	495	Right-handed alpha
Helix 16	AB7	A	502	511	Right-handed alpha
Helix 17	AB8	A	513	526	Right-handed alpha
Helix 18	AB9	A	535	544	Right-handed alpha
Helix 19	AC1	A	550	559	Right-handed alpha
Helix 20	AC2	A	561	564	Right-handed 310
Helix 21	AC3	A	565	572	Right-handed alpha
Helix 22	AC4	A	573	583	Right-handed alpha
Helix 23	AC5	A	587	596	Right-handed alpha
Helix 24	AC6	A	609	632	Right-handed alpha
Helix 25	AC7	A	637	639	Right-handed 310
Helix 26	AC8	A	640	649	Right-handed alpha
Helix 27	AC9	A	649	656	Right-handed alpha
Helix 28	AD1	A	668	690	Right-handed alpha
Helix 29	AD2	A	697	704	Right-handed alpha
Helix 30	AD3	A	704	712	Right-handed alpha
Helix 31	AD4	A	714	720	Right-handed alpha
Helix 32	AD5	A	721	723	Right-handed 310
Helix 33	AD6	A	724	735	Right-handed alpha
Helix 34	AD7	A	738	747	Right-handed alpha
Helix 35	AD8	A	750	754	Right-handed 310
Helix 36	AD9	A	755	762	Right-handed alpha
Helix 37	AE1	A	763	776	Right-handed alpha
Helix 38	AE2	B	10	15	Right-handed alpha
Helix 39	AE3	B	19	23	Right-handed 310
Helix 40	AE4	B	26	40	Right-handed alpha
Helix 41	AE5	B	54	68	Right-handed alpha
Helix 42	AE6	B	70	74	Right-handed alpha
Helix 43	AE7	B	85	99	Right-handed alpha
Helix 44	AE8	B	116	119	Right-handed 310
Helix 45	AE9	B	120	134	Right-handed alpha
Helix 46	AF1	B	146	150	Right-handed 310
Helix 47	AF2	B	151	158	Right-handed alpha
Helix 48	AF3	B	167	183	Right-handed alpha
Helix 49	AF4	B	187	199	Right-handed alpha
Helix 50	AF5	B	201	215	Right-handed alpha
Helix 51	AF6	B	220	226	Right-handed alpha
Helix 52	AF7	B	231	241	Right-handed alpha
Helix 53	AF8	B	244	256	Right-handed alpha
Helix 54	AF9	B	262	276	Right-handed alpha
Helix 55	AG1	B	281	302	Right-handed alpha
Helix 56	AG2	B	305	320	Right-handed alpha
Helix 57	AG3	C	9	13	Right-handed 310
Helix 58	AG4	C	14	19	Right-handed alpha
Helix 59	AG5	C	23	27	Right-handed 310
Helix 60	AG6	C	30	43	Right-handed alpha
Helix 61	AG7	C	58	72	Right-handed alpha
Helix 62	AG8	C	73	77	Right-handed 310
Helix 63	AG9	C	89	102	Right-handed alpha
Helix 64	AH1	C	118	122	Right-handed 310
Helix 65	AH2	C	123	137	Right-handed alpha
Helix 66	AH3	C	149	153	Right-handed 310
Helix 67	AH4	C	154	160	Right-handed alpha
Helix 68	AH5	C	170	185	Right-handed alpha
Helix 69	AH6	C	190	202	Right-handed alpha
Helix 70	AH7	C	204	219	Right-handed alpha
Helix 71	AH8	C	228	237	Right-handed alpha
Helix 72	AH9	C	240	254	Right-handed alpha
Helix 73	AI1	C	255	271	Right-handed alpha
Helix 74	AI2	C	273	287	Right-handed alpha
Helix 75	AI3	C	292	312	Right-handed alpha
Helix 76	AI4	C	315	332	Right-handed alpha
Helix 77	AI5	D	26	31	Right-handed alpha
Helix 78	AI6	D	35	39	Right-handed 310
Helix 79	AI7	D	42	56	Right-handed alpha
Helix 80	AI8	D	70	91	Right-handed alpha
Helix 81	AI9	D	102	116	Right-handed alpha
Helix 82	AJ1	D	122	129	Right-handed alpha
Helix 83	AJ2	D	142	145	Right-handed 310
Helix 84	AJ3	D	146	160	Right-handed alpha
Helix 85	AJ4	D	172	176	Right-handed 310
Helix 86	AJ5	D	177	184	Right-handed alpha
Helix 87	AJ6	D	197	208	Right-handed alpha
Helix 88	AJ7	D	215	225	Right-handed alpha
Helix 89	AJ8	D	227	246	Right-handed alpha
Helix 90	AJ9	D	252	260	Right-handed alpha
Helix 91	AK1	D	264	278	Right-handed alpha
Helix 92	AK2	D	279	292	Right-handed alpha
Helix 93	AK3	D	296	310	Right-handed alpha
Helix 94	AK4	D	315	334	Right-handed alpha
Helix 95	AK5	D	338	352	Right-handed alpha
Helix 96	AK6	E	3	8	Right-handed alpha
Helix 97	AK7	E	12	16	Right-handed 310
Helix 98	AK8	E	19	32	Right-handed alpha
Helix 99	AK9	E	33	36	Right-handed 310
Helix 100	AL1	E	48	61	Right-handed alpha
Helix 101	AL2	E	62	67	Right-handed 310
Helix 102	AL3	E	97	103	Right-handed 310
Helix 103	AL4	E	104	118	Right-handed alpha
Helix 104	AL5	E	142	146	Right-handed 310
Helix 105	AL6	E	147	161	Right-handed alpha
Helix 106	AL7	E	178	184	Right-handed alpha
Helix 107	AL8	E	194	210	Right-handed alpha
Helix 108	AL9	E	216	226	Right-handed alpha
Helix 109	AM1	E	229	243	Right-handed alpha
Helix 110	AM2	E	257	273	Right-handed alpha
Helix 111	AM3	E	275	292	Right-handed alpha
Helix 112	AM4	E	295	309	Right-handed alpha
Helix 113	AM5	E	314	334	Right-handed alpha
Helix 114	AM6	E	337	353	Right-handed alpha
Helix 115	AM7	F	9	18	Right-handed alpha
Helix 116	AM8	F	55	57	Right-handed 310
Helix 117	AM9	F	72	81	Right-handed alpha
Helix 118	AN1	F	141	153	Right-handed alpha
Helix 119	AN2	F	190	194	Right-handed 310
Helix 120	AN3	F	209	216	Right-handed alpha
Helix 121	AN4	F	217	222	Right-handed 310
Helix 122	AN5	G	9	19	Right-handed alpha
Helix 123	AN6	G	55	57	Right-handed 310
Helix 124	AN7	G	72	80	Right-handed alpha
Helix 125	AN8	G	141	153	Right-handed alpha
Helix 126	AN9	G	190	194	Right-handed 310
Helix 127	AO1	G	209	216	Right-handed alpha
Helix 128	AO2	G	217	222	Right-handed 310
Helix 129	AO3	H	8	18	Right-handed alpha
Helix 130	AO4	H	71	81	Right-handed alpha
Helix 131	AO5	H	141	153	Right-handed alpha
Helix 132	AO6	H	190	194	Right-handed 310
Helix 133	AO7	H	209	218	Right-handed alpha
Helix 134	AO8	H	219	222	Right-handed 310

There are 17 sheets in PDB entry 8DR4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	377	first strand
Strand 2	A	419	423	parallel
Strand 3	A	451	455	parallel
Strand 4	A	348	352	parallel
Strand 5	A	471	474	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	498	first strand
Strand 2	A	530	531	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	599	601	first strand
Strand 2	A	658	660	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	78	first strand
Strand 2	B	109	114	parallel
Strand 3	B	138	144	parallel
Strand 4	B	45	48	parallel
Strand 5	B	159	162	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	82	first strand
Strand 2	C	112	116	parallel
Strand 3	C	141	147	parallel
Strand 4	C	49	52	parallel
Strand 5	C	162	165	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	189	first strand
Strand 2	C	226	227	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	95	first strand
Strand 2	D	135	140	parallel
Strand 3	D	164	170	parallel
Strand 4	D	61	64	parallel
Strand 5	D	185	188	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	69	76	first strand
Strand 2	E	82	89	anti-parallel
Strand 3	E	93	96	anti-parallel
Strand 4	E	136	140	parallel
Strand 5	E	165	171	parallel
Strand 6	E	39	42	parallel
Strand 7	E	186	189	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	212	213	first strand
Strand 2	E	247	248	parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	62	first strand
Strand 2	F	2	6	anti-parallel
Strand 3	F	87	92	anti-parallel
Strand 4	F	98	105	anti-parallel
Strand 5	F	110	117	anti-parallel
Strand 6	H	176	179	anti-parallel
Strand 7	H	166	172	anti-parallel
Strand 8	H	157	163	anti-parallel
Strand 9	H	203	208	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	71	first strand
Strand 2	F	25	31	anti-parallel
Strand 3	F	34	40	anti-parallel
Strand 4	F	46	53	anti-parallel
Strand 5	F	244	250	anti-parallel
Strand 6	F	235	240	anti-parallel
Strand 7	F	224	229	anti-parallel
Strand 8	F	135	140	anti-parallel
Strand 9	F	196	199	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	203	208	first strand
Strand 2	F	157	163	anti-parallel
Strand 3	F	166	172	anti-parallel
Strand 4	F	176	182	anti-parallel
Strand 5	G	110	117	anti-parallel
Strand 6	G	98	105	anti-parallel
Strand 7	G	87	92	anti-parallel
Strand 8	G	2	6	anti-parallel
Strand 9	G	59	62	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	66	71	first strand
Strand 2	G	25	31	anti-parallel
Strand 3	G	34	40	anti-parallel
Strand 4	G	46	53	anti-parallel
Strand 5	G	244	250	anti-parallel
Strand 6	G	235	240	anti-parallel
Strand 7	G	224	229	anti-parallel
Strand 8	G	135	140	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	177	182	first strand
Strand 2	G	166	172	anti-parallel
Strand 3	G	157	163	anti-parallel
Strand 4	G	203	208	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	5	first strand
Strand 2	H	59	61	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	66	68	first strand
Strand 2	H	28	31	anti-parallel
Strand 3	H	34	40	anti-parallel
Strand 4	H	46	53	anti-parallel
Strand 5	H	245	250	anti-parallel
Strand 6	H	235	240	anti-parallel
Strand 7	H	224	229	anti-parallel
Strand 8	H	135	140	anti-parallel
Strand 9	H	196	199	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	89	91	first strand
Strand 2	H	98	102	anti-parallel
Strand 3	H	114	117	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DR4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DR4