Analysis of interatomic Contacts of Structural Units in PDB entry:
8DRE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DRE entry

There are 6 chains in PDB entry 8DRE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 15	GLU 808
B	PRO 15	GLU 808
C	PRO 15	LEU 402
D	PRO 15	GLU 410
E	PRO 15	ASN 409
F	ALA 16	ASP 803

There are140 helices in PDB entry 8DRE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	21	Right-handed 310
Helix 2	AA2	A	22	50	Right-handed alpha
Helix 3	AA3	A	102	117	Right-handed alpha
Helix 4	AA4	A	119	141	Right-handed alpha
Helix 5	AA5	A	141	146	Right-handed alpha
Helix 6	AA6	A	146	165	Right-handed alpha
Helix 7	AA7	A	166	175	Right-handed alpha
Helix 8	AA8	A	233	255	Right-handed alpha
Helix 9	AA9	A	258	286	Right-handed alpha
Helix 10	AB1	A	287	289	Right-handed 310
Helix 11	AB2	A	315	346	Right-handed alpha
Helix 12	AB3	A	353	360	Right-handed alpha
Helix 13	AB4	A	369	383	Right-handed alpha
Helix 14	AB5	A	383	392	Right-handed alpha
Helix 15	AB6	A	395	411	Right-handed alpha
Helix 16	AB7	A	412	420	Right-handed alpha
Helix 17	AB8	A	439	444	Right-handed alpha
Helix 18	AB9	A	462	467	Right-handed 310
Helix 19	AC1	A	484	495	Right-handed alpha
Helix 20	AC2	A	536	542	Right-handed 310
Helix 21	AC3	A	559	566	Right-handed alpha
Helix 22	AC4	A	585	590	Right-handed 310
Helix 23	AC5	A	608	613	Right-handed alpha
Helix 24	AC6	A	629	638	Right-handed 310
Helix 25	AC7	A	655	661	Right-handed 310
Helix 26	AC8	A	680	684	Right-handed 310
Helix 27	AC9	A	701	706	Right-handed 310
Helix 28	AD1	A	724	730	Right-handed 310
Helix 29	AD2	A	747	753	Right-handed 310
Helix 30	AD3	A	770	776	Right-handed 310
Helix 31	AD4	A	787	793	Right-handed alpha
Helix 32	AD5	A	795	808	Right-handed alpha
Helix 33	AD6	B	16	21	Right-handed 310
Helix 34	AD7	B	22	49	Right-handed alpha
Helix 35	AD8	B	102	117	Right-handed alpha
Helix 36	AD9	B	119	146	Right-handed alpha
Helix 37	AE1	B	146	165	Right-handed alpha
Helix 38	AE2	B	166	175	Right-handed alpha
Helix 39	AE3	B	233	255	Right-handed alpha
Helix 40	AE4	B	259	286	Right-handed alpha
Helix 41	AE5	B	287	289	Right-handed 310
Helix 42	AE6	B	314	343	Right-handed alpha
Helix 43	AE7	B	353	360	Right-handed alpha
Helix 44	AE8	B	369	383	Right-handed alpha
Helix 45	AE9	B	383	391	Right-handed alpha
Helix 46	AF1	B	392	394	Right-handed 310
Helix 47	AF2	B	395	411	Right-handed alpha
Helix 48	AF3	B	412	419	Right-handed alpha
Helix 49	AF4	B	440	445	Right-handed alpha
Helix 50	AF5	B	462	468	Right-handed 310
Helix 51	AF6	B	484	495	Right-handed alpha
Helix 52	AF7	B	503	508	Right-handed 310
Helix 53	AF8	B	559	566	Right-handed alpha
Helix 54	AF9	B	567	569	Right-handed 310
Helix 55	AG1	B	586	590	Right-handed 310
Helix 56	AG2	B	609	613	Right-handed 310
Helix 57	AG3	B	633	638	Right-handed 310
Helix 58	AG4	B	655	661	Right-handed 310
Helix 59	AG5	B	679	684	Right-handed 310
Helix 60	AG6	B	701	705	Right-handed 310
Helix 61	AG7	B	724	729	Right-handed alpha
Helix 62	AG8	B	747	752	Right-handed 310
Helix 63	AG9	B	770	776	Right-handed 310
Helix 64	AH1	B	787	792	Right-handed alpha
Helix 65	AH2	B	795	808	Right-handed alpha
Helix 66	AH3	C	22	49	Right-handed alpha
Helix 67	AH4	C	102	117	Right-handed alpha
Helix 68	AH5	C	119	146	Right-handed alpha
Helix 69	AH6	C	146	165	Right-handed alpha
Helix 70	AH7	C	167	175	Right-handed alpha
Helix 71	AH8	C	241	255	Right-handed alpha
Helix 72	AH9	C	258	286	Right-handed alpha
Helix 73	AI1	C	287	289	Right-handed 310
Helix 74	AI2	C	314	343	Right-handed alpha
Helix 75	AI3	C	353	360	Right-handed alpha
Helix 76	AI4	C	370	383	Right-handed alpha
Helix 77	AI5	C	383	392	Right-handed alpha
Helix 78	AI6	C	395	401	Right-handed alpha
Helix 79	AI7	D	15	21	Right-handed 310
Helix 80	AI8	D	22	49	Right-handed alpha
Helix 81	AI9	D	102	117	Right-handed alpha
Helix 82	AJ1	D	119	146	Right-handed alpha
Helix 83	AJ2	D	146	166	Right-handed alpha
Helix 84	AJ3	D	166	175	Right-handed alpha
Helix 85	AJ4	D	233	255	Right-handed alpha
Helix 86	AJ5	D	258	286	Right-handed alpha
Helix 87	AJ6	D	287	289	Right-handed 310
Helix 88	AJ7	D	314	346	Right-handed alpha
Helix 89	AJ8	D	353	360	Right-handed alpha
Helix 90	AJ9	D	369	383	Right-handed alpha
Helix 91	AK1	D	383	391	Right-handed alpha
Helix 92	AK2	D	392	394	Right-handed 310
Helix 93	AK3	D	395	410	Right-handed alpha
Helix 94	AK4	E	15	19	Right-handed 310
Helix 95	AK5	E	22	50	Right-handed alpha
Helix 96	AK6	E	102	117	Right-handed alpha
Helix 97	AK7	E	119	146	Right-handed alpha
Helix 98	AK8	E	146	165	Right-handed alpha
Helix 99	AK9	E	166	175	Right-handed alpha
Helix 100	AL1	E	233	255	Right-handed alpha
Helix 101	AL2	E	259	286	Right-handed alpha
Helix 102	AL3	E	287	289	Right-handed 310
Helix 103	AL4	E	314	345	Right-handed alpha
Helix 104	AL5	E	353	358	Right-handed alpha
Helix 105	AL6	E	369	383	Right-handed alpha
Helix 106	AL7	E	383	391	Right-handed alpha
Helix 107	AL8	E	392	394	Right-handed 310
Helix 108	AL9	E	395	409	Right-handed alpha
Helix 109	AM1	F	22	47	Right-handed alpha
Helix 110	AM2	F	104	119	Right-handed alpha
Helix 111	AM3	F	121	143	Right-handed alpha
Helix 112	AM4	F	148	167	Right-handed alpha
Helix 113	AM5	F	168	179	Right-handed alpha
Helix 114	AM6	F	233	253	Right-handed alpha
Helix 115	AM7	F	256	284	Right-handed alpha
Helix 116	AM8	F	285	287	Right-handed 310
Helix 117	AM9	F	297	302	Right-handed alpha
Helix 118	AN1	F	312	344	Right-handed alpha
Helix 119	AN2	F	351	358	Right-handed alpha
Helix 120	AN3	F	367	381	Right-handed alpha
Helix 121	AN4	F	381	389	Right-handed alpha
Helix 122	AN5	F	390	392	Right-handed 310
Helix 123	AN6	F	394	409	Right-handed alpha
Helix 124	AN7	F	410	418	Right-handed alpha
Helix 125	AN8	F	460	466	Right-handed 310
Helix 126	AN9	F	482	493	Right-handed alpha
Helix 127	AO1	F	502	506	Right-handed 310
Helix 128	AO2	F	508	513	Right-handed 310
Helix 129	AO3	F	534	540	Right-handed 310
Helix 130	AO4	F	557	563	Right-handed alpha
Helix 131	AO5	F	582	587	Right-handed alpha
Helix 132	AO6	F	605	610	Right-handed alpha
Helix 133	AO7	F	629	636	Right-handed 310
Helix 134	AO8	F	653	659	Right-handed 310
Helix 135	AO9	F	676	682	Right-handed alpha
Helix 136	AP1	F	699	705	Right-handed 310
Helix 137	AP2	F	724	728	Right-handed 310
Helix 138	AP3	F	768	774	Right-handed 310
Helix 139	AP4	F	785	791	Right-handed alpha
Helix 140	AP5	F	793	802	Right-handed alpha

There are 17 sheets in PDB entry 8DRE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	56	first strand
Strand 2	A	307	311	anti-parallel
Strand 3	A	292	296	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	F	94	95	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	421	422	first strand
Strand 2	A	428	433	anti-parallel
Strand 3	A	450	454	parallel
Strand 4	A	473	477	parallel
Strand 5	A	497	501	parallel
Strand 6	A	520	524	parallel
Strand 7	A	548	552	parallel
Strand 8	A	571	575	parallel
Strand 9	A	595	599	parallel
Strand 10	A	618	620	parallel
Strand 11	A	643	645	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	459	461	first strand
Strand 2	A	481	483	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	666	668	first strand
Strand 2	A	689	691	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	759	760	first strand
Strand 2	A	784	785	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	56	first strand
Strand 2	B	307	311	anti-parallel
Strand 3	B	292	296	anti-parallel

Back to list of sheets
Back to top of page

There are 13 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	420	422	first strand
Strand 2	B	428	433	anti-parallel
Strand 3	B	450	454	parallel
Strand 4	B	473	477	parallel
Strand 5	B	497	501	parallel
Strand 6	B	520	524	parallel
Strand 7	B	548	552	parallel
Strand 8	B	571	575	parallel
Strand 9	B	595	599	parallel
Strand 10	B	618	620	parallel
Strand 11	B	643	645	parallel
Strand 12	B	666	668	parallel
Strand 13	B	689	691	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	459	461	first strand
Strand 2	B	481	483	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	712	714	first strand
Strand 2	B	735	737	parallel
Strand 3	B	758	760	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	56	first strand
Strand 2	C	307	311	anti-parallel
Strand 3	C	292	296	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	350	351	first strand
Strand 2	C	368	369	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	56	first strand
Strand 2	D	307	311	anti-parallel
Strand 3	D	292	296	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	56	first strand
Strand 2	E	307	311	anti-parallel
Strand 3	E	292	296	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	56	first strand
Strand 2	F	306	310	anti-parallel
Strand 3	F	290	293	anti-parallel

Back to list of sheets
Back to top of page

There are 17 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	419	420	first strand
Strand 2	F	426	431	anti-parallel
Strand 3	F	448	452	parallel
Strand 4	F	471	475	parallel
Strand 5	F	495	499	parallel
Strand 6	F	518	520	parallel
Strand 7	F	546	549	parallel
Strand 8	F	569	573	parallel
Strand 9	F	593	597	parallel
Strand 10	F	616	618	parallel
Strand 11	F	641	643	parallel
Strand 12	F	664	666	parallel
Strand 13	F	687	689	parallel
Strand 14	F	710	712	parallel
Strand 15	F	733	735	parallel
Strand 16	F	756	758	parallel
Strand 17	F	782	783	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	457	459	first strand
Strand 2	F	479	481	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DRE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DRE