Analysis of interatomic Contacts of Structural Units in PDB entry:
8DRP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DRP entry

There are 4 chains in PDB entry 8DRP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 4174	LEU 5036
B	PHE 4174	LEU 5036
C	PHE 4174	LEU 5036
D	PHE 4174	LEU 5036

There are104 helices in PDB entry 8DRP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4198	4205	Right-handed alpha
Helix 2	AA2	A	4207	4225	Right-handed alpha
Helix 3	AA3	A	4229	4252	Right-handed alpha
Helix 4	AA4	A	4324	4341	Right-handed alpha
Helix 5	AA5	A	4542	4558	Right-handed alpha
Helix 6	AA6	A	4559	4578	Right-handed alpha
Helix 7	AA7	A	4638	4665	Right-handed alpha
Helix 8	AA8	A	4665	4684	Right-handed alpha
Helix 9	AA9	A	4696	4702	Right-handed alpha
Helix 10	AB1	A	4703	4708	Right-handed 310
Helix 11	AB2	A	4767	4771	Right-handed alpha
Helix 12	AB3	A	4772	4785	Right-handed alpha
Helix 13	AB4	A	4786	4805	Right-handed alpha
Helix 14	AB5	A	4806	4813	Right-handed 310
Helix 15	AB6	A	4814	4820	Right-handed alpha
Helix 16	AB7	A	4820	4833	Right-handed alpha
Helix 17	AB8	A	4833	4859	Right-handed alpha
Helix 18	AB9	A	4860	4863	Right-handed 310
Helix 19	AC1	A	4878	4894	Right-handed alpha
Helix 20	AC2	A	4909	4926	Right-handed alpha
Helix 21	AC3	A	4927	4957	Right-handed alpha
Helix 22	AC4	A	4964	4970	Right-handed alpha
Helix 23	AC5	A	4973	4981	Right-handed alpha
Helix 24	AC6	A	4984	4998	Right-handed alpha
Helix 25	AC7	A	5004	5016	Right-handed alpha
Helix 26	AC8	A	5027	5032	Right-handed alpha
Helix 27	AC9	B	4198	4205	Right-handed alpha
Helix 28	AD1	B	4207	4225	Right-handed alpha
Helix 29	AD2	B	4229	4252	Right-handed alpha
Helix 30	AD3	B	4324	4341	Right-handed alpha
Helix 31	AD4	B	4542	4558	Right-handed alpha
Helix 32	AD5	B	4559	4578	Right-handed alpha
Helix 33	AD6	B	4638	4665	Right-handed alpha
Helix 34	AD7	B	4665	4684	Right-handed alpha
Helix 35	AD8	B	4696	4702	Right-handed alpha
Helix 36	AD9	B	4703	4708	Right-handed 310
Helix 37	AE1	B	4767	4771	Right-handed alpha
Helix 38	AE2	B	4772	4785	Right-handed alpha
Helix 39	AE3	B	4786	4805	Right-handed alpha
Helix 40	AE4	B	4806	4813	Right-handed 310
Helix 41	AE5	B	4814	4820	Right-handed alpha
Helix 42	AE6	B	4820	4833	Right-handed alpha
Helix 43	AE7	B	4833	4859	Right-handed alpha
Helix 44	AE8	B	4860	4863	Right-handed 310
Helix 45	AE9	B	4878	4894	Right-handed alpha
Helix 46	AF1	B	4909	4926	Right-handed alpha
Helix 47	AF2	B	4927	4957	Right-handed alpha
Helix 48	AF3	B	4964	4970	Right-handed alpha
Helix 49	AF4	B	4973	4981	Right-handed alpha
Helix 50	AF5	B	4984	4998	Right-handed alpha
Helix 51	AF6	B	5004	5016	Right-handed alpha
Helix 52	AF7	B	5027	5032	Right-handed alpha
Helix 53	AF8	C	4198	4205	Right-handed alpha
Helix 54	AF9	C	4207	4225	Right-handed alpha
Helix 55	AG1	C	4229	4252	Right-handed alpha
Helix 56	AG2	C	4324	4341	Right-handed alpha
Helix 57	AG3	C	4542	4558	Right-handed alpha
Helix 58	AG4	C	4559	4578	Right-handed alpha
Helix 59	AG5	C	4638	4665	Right-handed alpha
Helix 60	AG6	C	4665	4684	Right-handed alpha
Helix 61	AG7	C	4696	4702	Right-handed alpha
Helix 62	AG8	C	4703	4708	Right-handed 310
Helix 63	AG9	C	4767	4771	Right-handed alpha
Helix 64	AH1	C	4772	4785	Right-handed alpha
Helix 65	AH2	C	4786	4805	Right-handed alpha
Helix 66	AH3	C	4806	4813	Right-handed 310
Helix 67	AH4	C	4814	4820	Right-handed alpha
Helix 68	AH5	C	4820	4833	Right-handed alpha
Helix 69	AH6	C	4833	4859	Right-handed alpha
Helix 70	AH7	C	4860	4863	Right-handed 310
Helix 71	AH8	C	4878	4894	Right-handed alpha
Helix 72	AH9	C	4909	4926	Right-handed alpha
Helix 73	AI1	C	4927	4957	Right-handed alpha
Helix 74	AI2	C	4964	4970	Right-handed alpha
Helix 75	AI3	C	4973	4981	Right-handed alpha
Helix 76	AI4	C	4984	4998	Right-handed alpha
Helix 77	AI5	C	5004	5016	Right-handed alpha
Helix 78	AI6	C	5027	5032	Right-handed alpha
Helix 79	AI7	D	4198	4205	Right-handed alpha
Helix 80	AI8	D	4207	4225	Right-handed alpha
Helix 81	AI9	D	4229	4252	Right-handed alpha
Helix 82	AJ1	D	4324	4341	Right-handed alpha
Helix 83	AJ2	D	4542	4558	Right-handed alpha
Helix 84	AJ3	D	4559	4578	Right-handed alpha
Helix 85	AJ4	D	4638	4665	Right-handed alpha
Helix 86	AJ5	D	4665	4684	Right-handed alpha
Helix 87	AJ6	D	4696	4702	Right-handed alpha
Helix 88	AJ7	D	4703	4708	Right-handed 310
Helix 89	AJ8	D	4767	4771	Right-handed alpha
Helix 90	AJ9	D	4772	4785	Right-handed alpha
Helix 91	AK1	D	4786	4805	Right-handed alpha
Helix 92	AK2	D	4806	4813	Right-handed 310
Helix 93	AK3	D	4814	4820	Right-handed alpha
Helix 94	AK4	D	4820	4833	Right-handed alpha
Helix 95	AK5	D	4833	4859	Right-handed alpha
Helix 96	AK6	D	4860	4863	Right-handed 310
Helix 97	AK7	D	4878	4894	Right-handed alpha
Helix 98	AK8	D	4909	4926	Right-handed alpha
Helix 99	AK9	D	4927	4957	Right-handed alpha
Helix 100	AL1	D	4964	4970	Right-handed alpha
Helix 101	AL2	D	4973	4981	Right-handed alpha
Helix 102	AL3	D	4984	4998	Right-handed alpha
Helix 103	AL4	D	5004	5016	Right-handed alpha
Helix 104	AL5	D	5027	5032	Right-handed alpha

There are 8 sheets in PDB entry 8DRP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4178	4184	first strand
Strand 2	A	4190	4196	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4580	4583	first strand
Strand 2	A	4628	4631	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4178	4184	first strand
Strand 2	B	4190	4196	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4580	4583	first strand
Strand 2	B	4628	4631	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4178	4184	first strand
Strand 2	C	4190	4196	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4580	4583	first strand
Strand 2	C	4628	4631	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4178	4184	first strand
Strand 2	D	4190	4196	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4580	4583	first strand
Strand 2	D	4628	4631	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DRP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DRP