Analysis of interatomic Contacts of Structural Units in PDB entry:
8DS6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DS6 entry

There are 2 chains in PDB entry 8DS6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 128ASP 473
B
 SER 130TRP 472
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 8DS6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
130 158Right-handed alpha
Helix 2
AA2
A
215 222Right-handed alpha
Helix 3
AA3
A
262 270Right-handed alpha
Helix 4
AA4
A
273 299Right-handed alpha
Helix 5
AA5
A
306 308Right-handed 310
Helix 6
AA6
A
330 332Right-handed 310
Helix 7
AA7
A
348 361Right-handed alpha
Helix 8
AA8
A
368 384Right-handed alpha
Helix 9
AA9
A
387 400Right-handed alpha
Helix 10
AB1
A
420 440Right-handed alpha
Helix 11
AB2
A
446 459Right-handed alpha
Helix 12
AB3
A
460 473Right-handed alpha
Helix 13
AB4
B
131 158Right-handed alpha
Helix 14
AB5
B
214 224Right-handed alpha
Helix 15
AB6
B
262 270Right-handed alpha
Helix 16
AB7
B
277 298Right-handed alpha
Helix 17
AB8
B
306 309Right-handed 310
Helix 18
AB9
B
330 332Right-handed 310
Helix 19
AC1
B
348 363Right-handed alpha
Helix 20
AC2
B
368 385Right-handed alpha
Helix 21
AC3
B
387 400Right-handed alpha
Helix 22
AC4
B
415 418Right-handed 310
Helix 23
AC5
B
419 441Right-handed alpha
Helix 24
AC6
B
446 459Right-handed alpha
Helix 25
AC7
B
460 472Right-handed alpha
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There are 8 sheets in PDB entry 8DS6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 173first strand
Strand 2
A
185 194anti-parallel
Strand 3
A
180 181anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 173first strand
Strand 2
A
185 194anti-parallel
Strand 3
A
197 206anti-parallel
Strand 4
A
251 254anti-parallel
Strand 5
A
233 237anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 261first strand
Strand 2
A
310 313anti-parallel
Strand 3
A
325 328anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 302first strand
Strand 2
A
334 336anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 173first strand
Strand 2
B
185 194anti-parallel
Strand 3
B
180 182anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 173first strand
Strand 2
B
185 194anti-parallel
Strand 3
B
197 206anti-parallel
Strand 4
B
251 254anti-parallel
Strand 5
B
233 237anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 261first strand
Strand 2
B
311 313anti-parallel
Strand 3
B
325 327anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
300 302first strand
Strand 2
B
334 336anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il